Information for motif21


Reverse Opposite:

p-value:1e-11
log p-value:-2.600e+01
Information Content per bp:1.929
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets98.2 +/- 52.8bp
Average Position of motif in Background102.1 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0083.1_Irx3_1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TTGAATACATGT------
-AAAATACATGTAATACT

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTGAATACATGT------
-TAAATACATGTAAAATT

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTGAATACATGT------
-AATATACATGTAAAATT

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTGAATACATGT------
-AATATACATGTAATATA

PH0085.1_Irx4/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTGAATACATGT------
-AATATACATGTAAAACA

PH0087.1_Irx6/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTGAATACATGT------
-AAAATACATGTAAAAAT

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTGAATACATGT-
ACTATGAATGAATGAT

PB0018.1_Foxk1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTGAATACATGT-
NNNTTTGTTTACATTTN

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAATACATGT
NNNTATTGAATTGNNN-

PB0171.1_Sox18_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TTGAATACATGT-
GGACTGAATTCATGCC