Information for motif28


Reverse Opposite:

p-value:1e-9
log p-value:-2.211e+01
Information Content per bp:1.681
Number of Target Sequences with motif1011.0
Percentage of Target Sequences with motif9.45%
Number of Background Sequences with motif3072.1
Percentage of Background Sequences with motif7.79%
Average Position of motif in Targets101.6 +/- 56.5bp
Average Position of motif in Background100.1 +/- 54.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTAGCCGGGA
CTGTTGCTAGGS

E2F1(E2F)/Hela-E2F1-ChIP-Seq/Hoemr

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTAGCCGGGA-
-CWGGCGGGAA

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTAGCCGGGA
-CAGCC----

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTAGCCGGGA--
NNNGTAACTANGNNA

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GTAGCCGGGA
ATGTACAGTAGCAAAG-

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GTAGCCGGGA----
--TGGCGGGAAAHB

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTAGCCGGGA---
---GGCGGGAARN

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTAGCCGGGA
CGGAGC-----

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------GTAGCCGGGA
NNNTTAGGTAGCNTNT-

MA0048.1_NHLH1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTAGCCGGGA
GCGCAGCTGCGT