Information for motif3


Reverse Opposite:

p-value:1e-18
log p-value:-4.372e+01
Information Content per bp:1.819
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets116.1 +/- 49.1bp
Average Position of motif in Background143.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0071.1_RORA_1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CATTGACCKAGA-
---TGACCTTGAT

MA0072.1_RORA_2/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CATTGACCKAGA----
--TTGACCTANTTATN

FXR(NR/IR1)/Liver-FXR-ChIP-Seq/Homer

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CATTGACCKAGA
NAGGTCANTGACCT---

Esrrb(NR)/mES-Esrrb-ChIP-Seq/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CATTGACCKAGA
--NTGACCTTGA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CATTGACCKAGA
---TGACCT---

MA0141.1_Esrrb/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CATTGACCKAGA---
---TGACCTTGANNN

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CATTGACCKAGA
TGACCTTGACCT---

Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq/Homer

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CATTGACCKAGA
TGACCCAGTGACCTAC-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CATTGACCKAGA-
---TGACCTTGAV

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CATTGACCKAGA---
NNNNATGACCTTGANTN