Information for motif33


Reverse Opposite:

p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.834
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif14.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets100.9 +/- 54.9bp
Average Position of motif in Background108.2 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:BCCGGCAAGG--
-AAGGCAAGTGT

MA0144.1_Stat3/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-BCCGGCAAGG
TTCCAGGAAG-

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:BCCGGCAAGG---
---NTCAAGGTCA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:BCCGGCAAGG---
---BTCAAGGTCA

Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-BCCGGCAAGG
TTCCNGGAAG-

HEB?/mES-Nanog-ChIP-Seq/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:BCCGGCAAGG--
CACAGCAGGGGG

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---BCCGGCAAGG--
CCACACAGCAGGAGA

PB0024.1_Gcm1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----BCCGGCAAGG--
TCGTACCCGCATCATT

MA0028.1_ELK1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--BCCGGCAAGG
GAGCCGGAAG--

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:BCCGGCAAGG--------
-TATTCAAGGTCATGCGA