Information for motif35


Reverse Opposite:

p-value:1e-7
log p-value:-1.760e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets99.2 +/- 61.7bp
Average Position of motif in Background144.5 +/- 50.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCGCCATA---
TACGCCCCGCCACTCTG

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGCCCGCCATA
-AGCGCGCC---

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCCGCCATA--
ANCGCGCGCCCTTNN

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGCCCGCCATA---
AAGCCCCCCAAAAAT

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCCGCCATA--
NTCGCGCGCCTTNNN

MA0095.1_YY1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CAGCCCGCCATA
------GCCATC

MA0079.1_SP1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGCCCGCCATA
-ACCCCGCCCC-

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CAGCCCGCCATA---
---GCCGCCATCTTG

Tlx?/NPC-H3K4me1-ChIP-Seq/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCCGCCATA
TGGCAGNCTGCCAG-

PB0107.1_Ascl2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCGCCATA--
CTATCCCCGCCCTATT