Information for motif38


Reverse Opposite:

p-value:1e-6
log p-value:-1.598e+01
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets121.6 +/- 57.6bp
Average Position of motif in Background161.3 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATGTAGGGCACG---
NNNNTTGGGCACNNCN

MA0072.1_RORA_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATGTAGGGCACG
TATAAGTAGGTCAA-

MA0071.1_RORA_1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATGTAGGGCACG
ATCAAGGTCA--

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:ATGTAGGGCACG--
------BGCACGTA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:ATGTAGGGCACG---
-------GCACGTNC

MA0160.1_NR4A2/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATGTAGGGCACG
---AAGGTCAC-

HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.53
Offset:7
Orientation:forward strand
Alignment:ATGTAGGGCACG-----
-------GCACGTACCC

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:ATGTAGGGCACG---
-----NGGCACGTGC

Esrrb(NR)/mES-Esrrb-ChIP-Seq/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ATGTAGGGCACG
-TCAAGGTCAN-

PB0094.1_Zfp128_1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:ATGTAGGGCACG-------
--TTNGGGTACGCCNNANN