Information for motif4


Reverse Opposite:

p-value:1e-17
log p-value:-4.026e+01
Information Content per bp:1.615
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets104.0 +/- 57.3bp
Average Position of motif in Background102.0 +/- 42.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGGKTTTACATG------
-NNTTTTACATGTANNNT

PH0083.1_Irx3_1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGGKTTTACATG------
-ANTATTACATGTANNNN

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGKTTTACATG------
-ANTNNTACATGTANNTN

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGKTTTACATG------
-NNTATTACATGTANNNT

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGKTTTACATG------
-ANTNTTACATGTATNTA

PH0087.1_Irx6/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGKTTTACATG------
-ANTTNTACATGTANTTN

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGGKTTTACATG
TTAGAGGGATTAACAAT

MA0030.1_FOXF2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGKTTTACATG
CAAACGTAAACAAT

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGKTTTACATG---
TGATTGTTAACAGTTGG

MA0031.1_FOXD1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGGKTTTACATG
---GTAAACAT-