Information for motif40


Reverse Opposite:

p-value:1e-6
log p-value:-1.547e+01
Information Content per bp:1.961
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets88.6 +/- 31.6bp
Average Position of motif in Background119.7 +/- 63.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GTCCATGCTT
---CAAGCTT

MA0095.1_YY1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCCATGCTT
-GCCATC---

MA0077.1_SOX9/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTCCATGCTT-
--CCATTGTTC

Sox2(HMG)/mES-Sox2-ChIP-Seq/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTCCATGCTT-
-NCCATTGTTC

MA0138.2_REST/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GTCCATGCTT-----
GGCGCTGTCCATGGTGCTGAA

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTCCATGCTT----
ANNTCCATTGTTCNNN

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GTCCATGCTT----
GGAGCTGTCCATGGTGCTGA

MA0138.1_REST/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GTCCATGCTT----
GCGCTGTCCATGGTGCTGA

PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTCCATGCTT------
NGTCACGCTTGGCTGC

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------GTCCATGCTT
GGCAAAAGTCCAATAA-