Information for motif41


Reverse Opposite:

p-value:1e-6
log p-value:-1.528e+01
Information Content per bp:1.530
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets89.4 +/- 61.2bp
Average Position of motif in Background81.0 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCTAAGTTCT-
-TTAAGTGCTT

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCTAAGTTCT-----
CTTTAAGTACTTAATG

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTAAGTTCT-----
NATTTAAGTACTTANNA

PB0194.1_Zbtb12_2/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCTAAGTTCT-------
--AGNGTTCTAATGANN

MA0109.1_Hltf/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCTAAGTTCT
NNATAAGGNN-

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTAAGTTCT----
NTNNTTAAGTGGTTANN

MA0124.1_NKX3-1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCTAAGTTCT
--TAAGTAT-

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCTAAGTTCT---
NNNTCCTTTGTTCTNNN

PB0090.1_Zbtb12_1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTAAGTTCT-------
CTAAGGTTCTAGATCAC

MA0017.1_NR2F1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CCTAAGTTCT
AGGTTCAAAGGTCA