Information for motif5


Reverse Opposite:

p-value:1e-16
log p-value:-3.884e+01
Information Content per bp:1.932
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets86.8 +/- 39.1bp
Average Position of motif in Background113.7 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0031.1_Hoxa3_1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCTAATCACCTC--
GTTAATTANCTCNN

PH0050.1_Hoxa3/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTAATCACCTC--
ACTAATTANCNCNA

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCTAATCACCTC
GNNAGCTAATCCCCCN

PH0020.1_Dlx1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTAATCACCTC--
ATTAATTANCTCAN

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCTAATCACCTC--
CGACCCAATCAACGGTG

PH0074.1_Hoxd1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCTAATCACCTC--
TAAACTAATTAGCTGTA

PH0058.1_Hoxb3/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCTAATCACCTC-
TNNNACTAATTAGNTCA

PH0045.1_Hoxa1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTAATCACCTC--
ACGGTAATTAGCTCAG

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCTAATCACCTC-
NNNAATTAATCCCCNCN

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTAATCACCTC--
NNTAATCCNGNCNN