Information for motif6


Reverse Opposite:

p-value:1e-16
log p-value:-3.721e+01
Information Content per bp:1.833
Number of Target Sequences with motif118.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif182.3
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets100.6 +/- 58.4bp
Average Position of motif in Background104.7 +/- 52.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----CTGGTTAATA--
GAAAACTAGTTAACATC

MA0046.1_HNF1A/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTGGTTAATA------
--GGTTAATAATTAAC

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGGTTAATA---
ANNNCTAGTTAACNGNN

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGGTTAATA-
-TGATTGATGA

PB0109.1_Bbx_2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGGTTAATA-----
TGATTGTTAACAGTTGG

PH0150.1_Pou4f3/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGGTTAATA---
GACNTCATTAATAANN

Hoxb4/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGGTTAATA---
-TGATTRATGGCY

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGGTTAATA----
NNNTTAGTTAACTNANN

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTGGTTAATA--
AAACCTCGTAAAATTT

MA0151.1_ARID3A/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTGGTTAATA
---TTTAAT-