Information for motif9


Reverse Opposite:

p-value:1e-14
log p-value:-3.427e+01
Information Content per bp:1.928
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets85.3 +/- 47.9bp
Average Position of motif in Background136.2 +/- 62.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGAGAACACCA---
CAAACAACAACACCT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGAGAACACCA
CCAGGAACAG--

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGAGAACACCA
-AGATAASR---

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGAGAACACCA----
CATAAGACCACCATTAC

MA0035.2_Gata1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGAGAACACCA
ACAGATAAGAA--

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CAGAGAACACCA
GNNACCGAGAATNNN-

Erra(NR)/HepG2-Erra-ChIP-Seq/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGAGAACACCA
CAAAGGTCAG--

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq/Homer

Match Rank:8
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGAACACCA
CANAGNNCAAAGTCCA---

Gata2(Zf)/K562-GATA2-ChIP-Seq/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGAGAACACCA
NAGATAAGNN--

Gata1(Zf)/K562-GATA1-ChIP-Seq/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGAGAACACCA
CAGATAAGGN--