Information for 21-ATGCACACTGAT (Motif 19)

C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
Reverse Opposite:
G T C A A C G T A G T C C G T A A C T G G A C T C T A G C G A T A T C G A T G C C G T A A G C T
p-value:1e-9
log p-value:-2.116e+01
Information Content per bp:1.706
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif8.45%
Number of Background Sequences with motif27.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets117.0 +/- 0.0bp
Average Position of motif in Background2050.9 +/- 1283.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX2/MA1119.2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATGCACACTGAT
-TGAAACCTGAT
 C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
A C G T C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T

POU5F1/MA1115.2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGCACACTGAT
ATGCAAA-----
 C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
T C G A G A C T C T A G A G T C G C T A C T G A G C T A A C G T A C G T A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATGCACACTGAT-
NNTTTGCACACGGCCC
 A C G T A C G T A C G T C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATGCACACTGAT
CTCATGAATATTCAT
 A C G T A C G T A C G T C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATGCACACTGAT
ATGAATATTC--
 C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----ATGCACACTGAT
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Zscan4c(Zf)/ESC-Zscan4c-ChIP-seq(GSE140619)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATGCACACTGAT
ATRTGTGCAC----
 A C G T A C G T C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
C T G A A G C T T C A G G C A T C T A G A G C T C T A G A G T C T C G A A G T C A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATGCACACTGAT--
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ATGCACACTGAT
AATGGAAAAT---
 A C G T C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T

SIX1/MA1118.2/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ATGCACACTGAT
--GTAACCTGA-
 C T G A A C G T A T C G T A G C G C T A G A T C C G T A G T A C A C G T T A C G G T C A C A G T
A C G T A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T