Information for 5-CCCCTAAG (Motif 26)

G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G
Reverse Opposite:
G T A C A C G T A C G T C G T A C T A G C T A G A C T G A C T G
p-value:1e-4
log p-value:-1.067e+01
Information Content per bp:1.766
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif40.85%
Number of Background Sequences with motif4001.8
Percentage of Background Sequences with motif19.28%
Average Position of motif in Targets586.1 +/- 591.3bp
Average Position of motif in Background1678.6 +/- 2068.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.66
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CCCCTAAG---
---CTAATKGV
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

BSX/MA0876.2/Jaspar

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CCCCTAAG--
----TAATTG
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G C T A C G T C T A G

BARX1/MA0875.2/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCCCTAAG--
----TAATTG
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C T A G

HOXB3/MA0903.2/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCCCTAAG--
----TAATTA
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C T G A A G C T A C G T C T G A

ISL2/MA0914.2/Jaspar

Match Rank:5
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCCCTAAG--
----TAAGTG
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A G C T A C A T G C G A T C T A G

GSX1/MA0892.2/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCCCTAAG--
----TAATTA
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C G T A A G C T C A G T C T G A

PB0128.1_Gcm1_2/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CCCCTAAG----
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

Nkx3-1/MA0124.3/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CCCCTAAG---
----TAAGTGG
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C T G A A C T G C G A T T C A G A T C G

HOXA7/MA1498.3/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CCCCTAAG--
----TAATTG
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C G T A C G T A G A C T C A G T C T A G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCCCTAAG---
---YTAATCCY
 G T A C G T A C G A T C G A T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C