Information for 6-CAATTGTGTTGA (Motif 5)

A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C G T A C T G
p-value:1e-16
log p-value:-3.888e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif9.86%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.0 +/- 0.0bp
Average Position of motif in Background1493.7 +/- 355.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAATTGTGTTGA-
AAAATTGTTATGAA
 A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAATTGTGTTGA
NNNCCATTGTGTNAN
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAATTGTGTTGA--
TTCAATTGTTCTAAAA
 A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0066.1_Sox17_1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAATTGTGTTGA
NNATNAATTGTTTNN-
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAATTGTGTTGA
CCATTGTTNY--
 A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CAATTGTGTTGA--
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAATTGTGTTGA-
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAATTGTGTTGA--
TAATTGTTCTAAAC
 A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAATTGTGTTGA
CCATTGTTYB--
 A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T

SRY/MA0084.2/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAATTGTGTTGA
--ATTGTTT---
 A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C T G C G T A
A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T A C G T A C G T A C G T