Information for 9-CTKAAGTGRCAA (Motif 8)

A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
Reverse Opposite:
C A G T C G A T A T C G A G T C T G A C C G T A A G T C A C G T A C G T T G C A T G C A T C A G
p-value:1e-15
log p-value:-3.628e+01
Information Content per bp:1.729
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif14.08%
Number of Background Sequences with motif39.0
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets289.5 +/- 124.3bp
Average Position of motif in Background1402.8 +/- 1335.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-4/MA2003.2/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CTKAAGTGRCAA
-TCAAGTGG---
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A C G T G C A T A T G C C T G A T C G A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

NKX2-3/MA0672.2/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CTKAAGTGRCAA
-TCAAGTGG---
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A C G T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTKAAGTGRCAA--
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTKAAGTGRCAA
CTYRAGTGSY--
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

NKX2-8/MA0673.2/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTKAAGTGRCAA
-TCAAGTGG---
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A C G T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTKAAGTGRCAA
BTBRAGTGSN--
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

Nkx3-1/MA0124.3/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CTKAAGTGRCAA
--TAAGTGG---
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A C G T A C G T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A C G T A C G T A C G T

Nkx2-1/MA1994.2/Jaspar

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTKAAGTGRCAA
-TCAAGTG----
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A C G T C G A T A G T C T C G A G T C A C T A G C G A T C T A G A C G T A C G T A C G T A C G T

Nkx3-2/MA0122.4/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTKAAGTGRCAA
-TTAAGTGGTT-
 A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A
A C G T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTKAAGTGRCAA-
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G A T A C T G C T A G T A G C C G T A G C T A A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A