Information for 18-CACKAGAGCCTC (Motif 17)

A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C
Reverse Opposite:
A C T G C T G A C A T G C T A G A G T C C G A T A T G C A C G T G T A C T A C G A C G T A C T G
p-value:1e-13
log p-value:-3.001e+01
Information Content per bp:1.774
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif8.27%
Number of Background Sequences with motif39.8
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets69.1 +/- 39.2bp
Average Position of motif in Background1248.9 +/- 1161.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CACKAGAGCCTC
-----CAGCC--
 A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CACKAGAGCCTC--
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

ZSCAN16/MA2100.1/Jaspar

Match Rank:3
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CACKAGAGCCTC
AAGTGTTAACAGAGCCTC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C
T C G A C T G A C A T G G A C T C A T G G A C T G A C T C T G A G C T A G T A C G C T A T C A G T C G A T C A G A G T C G T A C A G C T A T G C

ZNF770/MA2099.1/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CACKAGAGCCTC-
-----CGGCCTCA
 A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G T C T C A G C T A G A T G C A T G C A C G T A T G C G T C A

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CACKAGAGCCTC
NHRTCACGACDN----
 A C G T A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C A C G T A C G T A C G T A C G T

Foxn1/MA1684.1/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CACKAGAGCCTC-
-------GCGTCC
 A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A G T C G A T C

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CACKAGAGCCTC--
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Npas4/MA1995.2/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CACKAGAGCCTC
GTCACGA-------
 A C G T A C G T A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C
T A C G C A G T T A G C G T C A A G T C A T C G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Isl1/MA1608.2/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CACKAGAGCCTC
CCATTAG------
 A C G T A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C
G A T C G T A C C T G A G C A T G A C T G C T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

BCL6/MA0463.3/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CACKAGAGCCTC
ATTCCTCGAAAGC---
 A C G T A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A T A C G C G T A A C T G G A T C G T A C A G C T A G T C
C T G A G C A T G A C T T G A C G A T C C G A T T G A C T C A G C G T A T G C A C G T A C A T G G A T C A C G T A C G T A C G T