Information for 4-ATGCCAAGAAGC (Motif 4)

C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C C G T A A C G T
p-value:1e-21
log p-value:-4.948e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif6.77%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.7 +/- 10.8bp
Average Position of motif in Background701.0 +/- 232.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.3/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:ATGCCAAGAAGC
-TGCCAAG----
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T G C A T C T A G G T A C A G T C C G T A T G C A A C T G A C G T A C G T A C G T A C G T

Stat5a/MA1624.2/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:ATGCCAAGAAGC
-TTCCAAGAA--
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T G A C T C G A T G T A C G A T C G C T A C T G A A C T G C G T A C T G A A C G T A C G T

NFIA/MA0670.2/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:ATGCCAAGAAGC
-TGCCAA-----
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.2/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATGCCAAGAAGC
-TTCCAAGAA--
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T

NFIX/MA0671.2/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATGCCAAGAAGC
-TGCCAA-----
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T G C A T A C T G A T G C A G T C T G C A C T G A A C G T A C G T A C G T A C G T A C G T

ZNF680/MA1729.2/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ATGCCAAGAAGC--
---CCAAGAAGAAT
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G T A C G T A C C T G A C T G A C T A G T C G A C T G A C T A G T G C A G T C A A G C T

Hic1/MA0739.2/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGCCAAGAAGC
ATGCCAAC----
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A C G T A C G T A C G T A C G T

Stat5b/MA1625.2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATGCCAAGAAGC
-TTCCCAGAA--
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A G C T C G A T G A T C G A T C G T A C C T G A A C T G C T G A T C G A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATGCCAAGAAGC
TTGCCAAG----
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

STAT3/MA0144.3/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATGCCAAGAAGC
-TTCCCAGAA--
 C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A A C G T A C G T