Details for gene set BIOCARTA_AGR_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___ClusterKO_vs_WT.RPKM_matrix___ClusterKO_vs_WT.cls #ClusterKO_versus_WT
Phenotype	RPKM_matrix___ClusterKO_vs_WT.cls#ClusterKO_versus_WT
Upregulated in class	ClusterKO
GeneSet	BIOCARTA_AGR_PATHWAY
Enrichment Score (ES)	0.80115616
Normalized Enrichment Score (NES)	1.3792318
Nominal p-value	0.009560229
FDR q-value	0.035727046
FWER p-Value	0.243

Fig 1: Enrichment plot: BIOCARTA_AGR_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Lama2	na	614	1.501	0.0741	Yes
2	Arhgef6	na	1178	1.237	0.1342	Yes
3	Pak1	na	1521	1.124	0.1918	Yes
4	Pak2	na	1980	1.010	0.2409	Yes
5	Cdc42	na	2563	0.906	0.2818	Yes
6	Lama4	na	2636	0.895	0.3312	Yes
7	Agrn	na	2644	0.893	0.3817	Yes
8	Cttn	na	2766	0.875	0.4291	Yes
9	Itga1	na	3204	0.817	0.4676	Yes
10	Mapk3	na	3275	0.809	0.5122	Yes
11	Utrn	na	4731	0.665	0.5240	Yes
12	Mapk1	na	4864	0.654	0.5587	Yes
13	Git2	na	5038	0.641	0.5919	Yes
14	Sp1	na	5273	0.623	0.6230	Yes
15	Dmd	na	5277	0.622	0.6582	Yes
16	Itgb1	na	5629	0.593	0.6855	Yes
17	Pak3	na	6770	0.517	0.6946	Yes
18	Mapk8	na	6857	0.511	0.7220	Yes
19	Jun	na	7021	0.500	0.7475	Yes
20	Pak4	na	7080	0.497	0.7746	Yes
21	Dag1	na	7475	0.472	0.7943	Yes
22	Chrm1	na	8888	0.392	0.7915	Yes
23	Lama1	na	9493	0.361	0.8012	Yes
24	Egfr	na	13342	0.174	0.7427	No
25	Dvl1	na	14211	0.139	0.7352	No
26	Acta1	na	20782	0.004	0.6188	No
27	Musk	na	21584	0.001	0.6046	No
28	Chrna1	na	25604	0.000	0.5333	No
29	Nrg3	na	46181	0.000	0.1681	No
30	Lama3	na	50656	-0.057	0.0919	No
31	Rapsn	na	52747	-0.169	0.0644	No

Fig 2: BIOCARTA_AGR_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_AGR_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_AGR_PATHWAY