Details for gene set BIOCARTA_NGF_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___ClusterKO_vs_WT.RPKM_matrix___ClusterKO_vs_WT.cls #ClusterKO_versus_WT
Phenotype	RPKM_matrix___ClusterKO_vs_WT.cls#ClusterKO_versus_WT
Upregulated in class	ClusterKO
GeneSet	BIOCARTA_NGF_PATHWAY
Enrichment Score (ES)	0.787845
Normalized Enrichment Score (NES)	1.3937333
Nominal p-value	0.0038535646
FDR q-value	0.053274397
FWER p-Value	0.186

Fig 1: Enrichment plot: BIOCARTA_NGF_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Pik3cg	na	599	1.509	0.1172	Yes
2	Ngfr	na	775	1.412	0.2337	Yes
3	Ngf	na	1196	1.230	0.3305	Yes
4	Elk1	na	3181	0.820	0.3647	Yes
5	Mapk3	na	3275	0.809	0.4316	Yes
6	Map2k1	na	5879	0.576	0.4342	Yes
7	Fos	na	6426	0.539	0.4701	Yes
8	Grb2	na	6753	0.518	0.5082	Yes
9	Mapk8	na	6857	0.511	0.5497	Yes
10	Jun	na	7021	0.500	0.5892	Yes
11	Csnk2a2	na	7243	0.486	0.6265	Yes
12	Csnk2a1	na	7541	0.468	0.6608	Yes
13	Pik3ca	na	7719	0.459	0.6965	Yes
14	Raf1	na	7937	0.447	0.7305	Yes
15	Shc1	na	9636	0.353	0.7302	Yes
16	Pik3r1	na	9928	0.337	0.7537	Yes
17	Sos1	na	10413	0.312	0.7715	Yes
18	Plcg1	na	10864	0.287	0.7878	Yes
19	Klk1b4	na	21089	0.003	0.6067	No
20	Klk1b3	na	43094	0.000	0.2162	No
21	Hras	na	53626	-0.230	0.0488	No

Fig 2: BIOCARTA_NGF_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_NGF_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_NGF_PATHWAY