Details for gene set BIOCARTA_NKT_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___ClusterKO_vs_WT.RPKM_matrix___ClusterKO_vs_WT.cls #ClusterKO_versus_WT
Phenotype	RPKM_matrix___ClusterKO_vs_WT.cls#ClusterKO_versus_WT
Upregulated in class	ClusterKO
GeneSet	BIOCARTA_NKT_PATHWAY
Enrichment Score (ES)	0.80400366
Normalized Enrichment Score (NES)	1.4781064
Nominal p-value	0.0038240917
FDR q-value	0.079625174
FWER p-Value	0.026

Fig 1: Enrichment plot: BIOCARTA_NKT_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Ccr2	na	55	2.274	0.1016	Yes
2	Cxcr4	na	98	2.118	0.1964	Yes
3	Tgfb1	na	354	1.708	0.2689	Yes
4	Ccr1	na	765	1.417	0.3256	Yes
5	Ccr5	na	785	1.410	0.3888	Yes
6	Ccl4	na	1228	1.218	0.4359	Yes
7	Ifngr1	na	1261	1.203	0.4896	Yes
8	Ccr7	na	1273	1.201	0.5436	Yes
9	Ifngr2	na	1451	1.149	0.5923	Yes
10	Tgfb2	na	1633	1.089	0.6382	Yes
11	Tgfb3	na	1929	1.021	0.6790	Yes
12	Ccl3	na	2252	0.960	0.7166	Yes
13	Ccr3	na	2771	0.874	0.7469	Yes
14	Noct	na	2823	0.865	0.7850	Yes
15	Il12rb2	na	4694	0.668	0.7820	Yes
16	Il4ra	na	5330	0.617	0.7985	Yes
17	Cd28	na	6398	0.541	0.8040	Yes
18	Cxcr3	na	9688	0.350	0.7614	No
19	Il18r1	na	12574	0.207	0.7196	No
20	Csf2	na	12733	0.200	0.7258	No
21	Ifng	na	15006	0.105	0.6902	No
22	Il4	na	18792	0.017	0.6238	No
23	Il5	na	19813	0.009	0.6061	No
24	Il2	na	52444	-0.150	0.0338	No
25	Il12rb1	na	52982	-0.183	0.0325	No
26	Cd4	na	53531	-0.220	0.0328	No
27	Cd40lg	na	55239	-0.393	0.0202	No

Fig 2: BIOCARTA_NKT_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_NKT_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_NKT_PATHWAY