Details for gene set BIOCARTA_41BB_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_ClusterKO.RPKM_matrix___PanKO_vs_ClusterKO.cls #PanKO_versus_ClusterKO
Phenotype	RPKM_matrix___PanKO_vs_ClusterKO.cls#PanKO_versus_ClusterKO
Upregulated in class	PanKO
GeneSet	BIOCARTA_41BB_PATHWAY
Enrichment Score (ES)	0.45431995
Normalized Enrichment Score (NES)	0.85836506
Nominal p-value	0.6745562
FDR q-value	1.0
FWER p-Value	0.948

Fig 1: Enrichment plot: BIOCARTA_41BB_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Map3k5	na	321	0.613	0.1202	Yes
2	Rela	na	1185	0.444	0.1961	Yes
3	Jun	na	1362	0.424	0.2802	Yes
4	Nfkb1	na	2363	0.340	0.3323	Yes
5	Tnfrsf9	na	2911	0.304	0.3850	Yes
6	Traf2	na	4370	0.229	0.4061	Yes
7	Map3k1	na	4404	0.226	0.4521	Yes
8	Tnfsf9	na	6132	0.160	0.4543	Yes
9	Nfkbia	na	7521	0.111	0.4526	No
10	Mapk8	na	10501	0.023	0.4046	No
11	Il4	na	41017	-0.017	-0.1334	No
12	Map4k5	na	43229	-0.059	-0.1604	No
13	Ikbkb	na	44969	-0.109	-0.1688	No
14	Il2	na	45987	-0.140	-0.1580	No
15	Atf2	na	51255	-0.337	-0.1823	No
16	Chuk	na	51416	-0.344	-0.1144	No
17	Mapk14	na	51843	-0.363	-0.0474	No
18	Ifng	na	55200	-0.622	0.0209	No

Fig 2: BIOCARTA_41BB_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_41BB_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_41BB_PATHWAY