Details for gene set BIOCARTA_ARF_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_ClusterKO.RPKM_matrix___PanKO_vs_ClusterKO.cls #PanKO_versus_ClusterKO
Phenotype	RPKM_matrix___PanKO_vs_ClusterKO.cls#PanKO_versus_ClusterKO
Upregulated in class	PanKO
GeneSet	BIOCARTA_ARF_PATHWAY
Enrichment Score (ES)	0.45312494
Normalized Enrichment Score (NES)	0.7911086
Nominal p-value	0.7234469
FDR q-value	1.0
FWER p-Value	0.962

Fig 1: Enrichment plot: BIOCARTA_ARF_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Twist1	na	0	1.145	0.2307	Yes
2	Myc	na	689	0.520	0.3232	Yes
3	Trp53	na	1824	0.382	0.3800	Yes
4	Mdm2	na	1925	0.372	0.4531	Yes
5	Polr1d	na	6710	0.138	0.3961	No
6	Polr1c	na	7659	0.107	0.4008	No
7	Cdkn2a	na	8764	0.072	0.3958	No
8	E2f1	na	8922	0.067	0.4065	No
9	Polr1a	na	10218	0.030	0.3897	No
10	Pik3ca	na	44386	-0.092	-0.1980	No
11	Tbx2	na	47452	-0.186	-0.2148	No
12	Pik3cg	na	47489	-0.189	-0.1775	No
13	Polr1b	na	49012	-0.243	-0.1555	No
14	Abl1	na	52540	-0.401	-0.1373	No
15	Rb1	na	53345	-0.450	-0.0609	No
16	Pik3r1	na	54770	-0.569	0.0285	No

Fig 2: BIOCARTA_ARF_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_ARF_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_ARF_PATHWAY