Details for gene set BIOCARTA_ATM_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_ClusterKO.RPKM_matrix___PanKO_vs_ClusterKO.cls #PanKO_versus_ClusterKO
Phenotype	RPKM_matrix___PanKO_vs_ClusterKO.cls#PanKO_versus_ClusterKO
Upregulated in class	PanKO
GeneSet	BIOCARTA_ATM_PATHWAY
Enrichment Score (ES)	0.6031882
Normalized Enrichment Score (NES)	1.0415839
Nominal p-value	0.47181627
FDR q-value	1.0
FWER p-Value	0.853

Fig 1: Enrichment plot: BIOCARTA_ATM_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Cdkn1a	na	669	0.525	0.1015	Yes
2	Rela	na	1185	0.444	0.1883	Yes
3	Jun	na	1362	0.424	0.2769	Yes
4	Gadd45a	na	1731	0.388	0.3543	Yes
5	Trp53	na	1824	0.382	0.4352	Yes
6	Mdm2	na	1925	0.372	0.5137	Yes
7	Nfkb1	na	2363	0.340	0.5794	Yes
8	Nbn	na	4621	0.217	0.5863	Yes
9	Rad51	na	6270	0.155	0.5905	Yes
10	Nfkbia	na	7521	0.111	0.5924	Yes
11	Chek1	na	8048	0.093	0.6032	Yes
12	Mapk8	na	10501	0.023	0.5647	No
13	Chek2	na	11759	0.004	0.5432	No
14	Trp73	na	12068	0.000	0.5379	No
15	Brca1	na	43356	-0.063	-0.0037	No
16	Mre11a	na	44920	-0.108	-0.0080	No
17	Rad50	na	49256	-0.253	-0.0302	No
18	Rpa1	na	50963	-0.323	0.0094	No
19	Abl1	na	52540	-0.401	0.0681	No

Fig 2: BIOCARTA_ATM_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_ATM_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_ATM_PATHWAY