Details for gene set BIOCARTA_MAL_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_ClusterKO.RPKM_matrix___PanKO_vs_ClusterKO.cls #PanKO_versus_ClusterKO
Phenotype	RPKM_matrix___PanKO_vs_ClusterKO.cls#PanKO_versus_ClusterKO
Upregulated in class	PanKO
GeneSet	BIOCARTA_MAL_PATHWAY
Enrichment Score (ES)	0.48930484
Normalized Enrichment Score (NES)	0.9527069
Nominal p-value	0.55776894
FDR q-value	1.0
FWER p-Value	0.906

Fig 1: Enrichment plot: BIOCARTA_MAL_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Hras	na	295	0.620	0.1379	Yes
2	Mal	na	513	0.559	0.2629	Yes
3	Srf	na	1874	0.376	0.3256	Yes
4	Acta1	na	2307	0.343	0.3970	Yes
5	Diaph1	na	2439	0.335	0.4719	Yes
6	Map3k1	na	4404	0.226	0.4893	Yes
7	Map2k2	na	9129	0.060	0.4194	No
8	Mapk3	na	9547	0.049	0.4233	No
9	Cdc42	na	10011	0.036	0.4234	No
10	Mapk8	na	10501	0.023	0.4201	No
11	Rhoa	na	11695	0.004	0.4000	No
12	Raf1	na	42592	-0.044	-0.1380	No
13	Limk1	na	44907	-0.108	-0.1542	No
14	Hnf1a	na	47347	-0.183	-0.1553	No
15	Map2k1	na	48705	-0.232	-0.1260	No
16	Rock1	na	50054	-0.285	-0.0841	No
17	Mapk1	na	52790	-0.415	-0.0369	No
18	Map4k2	na	53115	-0.436	0.0579	No

Fig 2: BIOCARTA_MAL_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_MAL_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_MAL_PATHWAY