Details for gene set BIOCARTA_INFLAM_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_Cyp2c44KO.RPKM_matrix___PanKO_vs_Cyp2c44KO.cls #PanKO_versus_Cyp2c44KO
Phenotype	RPKM_matrix___PanKO_vs_Cyp2c44KO.cls#PanKO_versus_Cyp2c44KO
Upregulated in class	PanKO
GeneSet	BIOCARTA_INFLAM_PATHWAY
Enrichment Score (ES)	0.7727654
Normalized Enrichment Score (NES)	1.4092293
Nominal p-value	0.015217391
FDR q-value	0.2779759
FWER p-Value	0.256

Fig 1: Enrichment plot: BIOCARTA_INFLAM_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Pdgfa	na	460	1.218	0.1158	Yes
2	Tgfb3	na	475	1.212	0.2389	Yes
3	Tgfb2	na	643	1.137	0.3517	Yes
4	Csf1	na	974	1.009	0.4485	Yes
5	Tgfb1	na	1049	0.985	0.5475	Yes
6	Tnf	na	1179	0.945	0.6414	Yes
7	Il11	na	1636	0.836	0.7184	Yes
8	Il1a	na	4310	0.505	0.7224	Yes
9	Il7	na	4349	0.501	0.7728	Yes
10	Csf2	na	8183	0.268	0.7321	No
11	Il15	na	8205	0.267	0.7589	No
12	Il10	na	9546	0.207	0.7562	No
13	Il6	na	10020	0.188	0.7670	No
14	Il2	na	11886	0.105	0.7446	No
15	Csf3	na	15620	0.003	0.6787	No
16	Il5	na	37779	0.000	0.2855	No
17	Ifna1	na	38380	0.000	0.2748	No
18	Il3	na	39567	0.000	0.2538	No
19	Il13	na	43691	-0.005	0.1812	No
20	Ifnb1	na	45574	-0.031	0.1510	No
21	Il4	na	45592	-0.032	0.1539	No
22	Cd4	na	47878	-0.113	0.1249	No
23	Ifng	na	50728	-0.255	0.1002	No

Fig 2: BIOCARTA_INFLAM_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_INFLAM_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_INFLAM_PATHWAY