Details for gene set BIOCARTA_TGFB_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_Cyp2c44KO.RPKM_matrix___PanKO_vs_Cyp2c44KO.cls #PanKO_versus_Cyp2c44KO
Phenotype	RPKM_matrix___PanKO_vs_Cyp2c44KO.cls#PanKO_versus_Cyp2c44KO
Upregulated in class	PanKO
GeneSet	BIOCARTA_TGFB_PATHWAY
Enrichment Score (ES)	0.83050275
Normalized Enrichment Score (NES)	1.328965
Nominal p-value	0.006085193
FDR q-value	0.20719199
FWER p-Value	0.48

Fig 1: Enrichment plot: BIOCARTA_TGFB_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Cdh1	na	34	1.704	0.1560	Yes
2	Tgfbr2	na	218	1.401	0.2815	Yes
3	Tgfb3	na	475	1.212	0.3884	Yes
4	Tgfb2	na	643	1.137	0.4899	Yes
5	Smad3	na	843	1.058	0.5835	Yes
6	Tgfb1	na	1049	0.985	0.6705	Yes
7	Tgfbr1	na	1059	0.981	0.7605	Yes
8	Mapk3	na	3072	0.625	0.7823	Yes
9	Skil	na	3400	0.588	0.8305	Yes
10	Smad2	na	6965	0.330	0.7976	No
11	Smad4	na	10061	0.187	0.7598	No
12	Map2k1	na	10319	0.174	0.7713	No
13	Crebbp	na	14364	0.023	0.7017	No
14	Apc	na	45652	-0.033	0.1496	No
15	Map3k7	na	46467	-0.056	0.1404	No
16	Ep300	na	48731	-0.150	0.1140	No
17	Smad7	na	50401	-0.235	0.1060	No

Fig 2: BIOCARTA_TGFB_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_TGFB_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_TGFB_PATHWAY