Details for gene set BIOCARTA_HIVNEF_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_WT.RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Phenotype	RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Upregulated in class	PanKO
GeneSet	BIOCARTA_HIVNEF_PATHWAY
Enrichment Score (ES)	0.7498347
Normalized Enrichment Score (NES)	1.3491094
Nominal p-value	0.013539651
FDR q-value	0.0936522
FWER p-Value	0.388

Fig 1: Enrichment plot: BIOCARTA_HIVNEF_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Prkcd	na	198	1.410	0.0424	Yes
2	Map3k14	na	318	1.317	0.0831	Yes
3	Map3k1	na	499	1.220	0.1196	Yes
4	Lmna	na	516	1.213	0.1588	Yes
5	Arhgdib	na	691	1.140	0.1927	Yes
6	Traf2	na	815	1.098	0.2263	Yes
7	Rela	na	840	1.090	0.2613	Yes
8	Sptan1	na	1038	1.027	0.2913	Yes
9	Nfkb1	na	1104	1.005	0.3228	Yes
10	Apaf1	na	1341	0.945	0.3493	Yes
11	Actg1	na	1513	0.907	0.3758	Yes
12	Tnfrsf1a	na	1583	0.893	0.4037	Yes
13	Tnfrsf1b	na	1715	0.862	0.4294	Yes
14	Tnf	na	1764	0.854	0.4563	Yes
15	Bcl2	na	1788	0.850	0.4836	Yes
16	Map3k5	na	1892	0.829	0.5087	Yes
17	Pak2	na	2117	0.791	0.5304	Yes
18	Nfkbia	na	2180	0.779	0.5547	Yes
19	Birc2	na	2857	0.692	0.5652	Yes
20	Casp2	na	3037	0.672	0.5839	Yes
21	Rasa1	na	3047	0.671	0.6055	Yes
22	Gsn	na	3127	0.661	0.6257	Yes
23	Traf1	na	3360	0.637	0.6422	Yes
24	Daxx	na	3641	0.607	0.6570	Yes
25	Mdm2	na	3696	0.603	0.6757	Yes
26	Ripk1	na	4046	0.570	0.6880	Yes
27	Mapk8	na	4468	0.534	0.6979	Yes
28	Casp8	na	5050	0.491	0.7036	Yes
29	Bid	na	5144	0.484	0.7177	Yes
30	Map2k7	na	5215	0.479	0.7320	Yes
31	Lmnb1	na	5226	0.478	0.7474	Yes
32	Psen1	na	6337	0.405	0.7409	Yes
33	Xiap	na	6550	0.391	0.7498	Yes
34	Cdk11b	na	7413	0.344	0.7457	No
35	Casp3	na	8031	0.310	0.7448	No
36	Casp6	na	9770	0.227	0.7214	No
37	Fasl	na	9980	0.218	0.7248	No
38	Fas	na	10328	0.202	0.7252	No
39	Dffb	na	10837	0.180	0.7220	No
40	Dffa	na	11465	0.152	0.7158	No
41	Fadd	na	11812	0.138	0.7142	No
42	Rb1	na	13005	0.095	0.6961	No
43	Prkdc	na	13386	0.082	0.6920	No
44	Chuk	na	14191	0.059	0.6797	No
45	Tradd	na	14355	0.055	0.6785	No
46	Cycs	na	15064	0.039	0.6672	No
47	Casp9	na	15400	0.033	0.6624	No
48	Lmnb2	na	47900	-0.017	0.0859	No
49	Casp7	na	51549	-0.168	0.0266	No
50	Parp1	na	52079	-0.193	0.0235	No
51	Cflar	na	52859	-0.242	0.0176	No
52	Bag4	na	54269	-0.352	0.0040	No
53	Psen2	na	54410	-0.366	0.0134	No
54	Cradd	na	55918	-0.661	0.0081	No

Fig 2: BIOCARTA_HIVNEF_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_HIVNEF_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_HIVNEF_PATHWAY