Details for gene set BIOCARTA_INFLAM_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_WT.RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Phenotype	RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Upregulated in class	PanKO
GeneSet	BIOCARTA_INFLAM_PATHWAY
Enrichment Score (ES)	0.80201215
Normalized Enrichment Score (NES)	1.3954587
Nominal p-value	0.034412954
FDR q-value	0.09991785
FWER p-Value	0.235

Fig 1: Enrichment plot: BIOCARTA_INFLAM_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Pdgfa	na	127	1.493	0.1390	Yes
2	Tgfb1	na	464	1.234	0.2498	Yes
3	Tgfb3	na	735	1.123	0.3512	Yes
4	Csf1	na	777	1.109	0.4555	Yes
5	Tgfb2	na	976	1.049	0.5512	Yes
6	Tnf	na	1764	0.854	0.6181	Yes
7	Il6	na	2365	0.753	0.6787	Yes
8	Il11	na	2730	0.708	0.7392	Yes
9	Il1a	na	2871	0.690	0.8020	Yes
10	Il15	na	8140	0.305	0.7373	No
11	Il7	na	9528	0.238	0.7353	No
12	Csf3	na	18071	0.003	0.5840	No
13	Il13	na	22207	0.000	0.5106	No
14	Ifnb1	na	30580	0.000	0.3620	No
15	Il3	na	41379	0.000	0.1704	No
16	Il4	na	42217	0.000	0.1556	No
17	Il5	na	45296	0.000	0.1010	No
18	Ifna1	na	45932	0.000	0.0897	No
19	Csf2	na	47574	-0.010	0.0615	No
20	Il10	na	48850	-0.043	0.0430	No
21	Il2	na	52594	-0.225	-0.0022	No
22	Ifng	na	54235	-0.348	0.0017	No
23	Cd4	na	54577	-0.384	0.0319	No

Fig 2: BIOCARTA_INFLAM_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_INFLAM_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_INFLAM_PATHWAY