Details for gene set BIOCARTA_NGF_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_WT.RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Phenotype	RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Upregulated in class	PanKO
GeneSet	BIOCARTA_NGF_PATHWAY
Enrichment Score (ES)	0.779288
Normalized Enrichment Score (NES)	1.3580829
Nominal p-value	0.017077798
FDR q-value	0.08685392
FWER p-Value	0.35

Fig 1: Enrichment plot: BIOCARTA_NGF_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Ngf	na	432	1.253	0.1064	Yes
2	Ngfr	na	529	1.208	0.2146	Yes
3	Fos	na	1014	1.036	0.3002	Yes
4	Jun	na	1278	0.959	0.3828	Yes
5	Elk1	na	1723	0.861	0.4532	Yes
6	Pik3cg	na	2217	0.774	0.5150	Yes
7	Mapk3	na	2271	0.767	0.5838	Yes
8	Csnk2a2	na	4006	0.574	0.6052	Yes
9	Mapk8	na	4468	0.534	0.6457	Yes
10	Grb2	na	5228	0.478	0.6757	Yes
11	Raf1	na	6384	0.403	0.6918	Yes
12	Hras	na	6526	0.393	0.7251	Yes
13	Pik3ca	na	6982	0.367	0.7504	Yes
14	Map2k1	na	7361	0.346	0.7752	Yes
15	Shc1	na	8578	0.282	0.7793	Yes
16	Csnk2a1	na	12759	0.103	0.7145	No
17	Klk1b4	na	13902	0.067	0.7003	No
18	Klk1b3	na	41969	0.000	0.2023	No
19	Plcg1	na	51407	-0.161	0.0494	No
20	Sos1	na	52011	-0.192	0.0562	No
21	Pik3r1	na	52729	-0.233	0.0647	No

Fig 2: BIOCARTA_NGF_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: BIOCARTA_NGF_PATHWAY: Random ES distribution   
Gene set null distribution of ES for BIOCARTA_NGF_PATHWAY