Details for gene set REACTOME_ECM_PROTEOGLYCANS[GSEA]

Table: GSEA Results Summary

Dataset	RPKM_matrix___PanKO_vs_WT.RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Phenotype	RPKM_matrix___PanKO_vs_WT.cls#PanKO_versus_WT
Upregulated in class	PanKO
GeneSet	REACTOME_ECM_PROTEOGLYCANS
Enrichment Score (ES)	0.85137177
Normalized Enrichment Score (NES)	1.4461666
Nominal p-value	0.0
FDR q-value	0.21159
FWER p-Value	0.535

Fig 1: Enrichment plot: REACTOME_ECM_PROTEOGLYCANS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Itgax	na	113	1.512	0.0499	Yes
2	Col6a3	na	130	1.489	0.1007	Yes
3	Col5a2	na	168	1.447	0.1497	Yes
4	Col1a1	na	227	1.393	0.1964	Yes
5	Sparc	na	350	1.298	0.2388	Yes
6	Col1a2	na	383	1.281	0.2822	Yes
7	Vcan	na	404	1.272	0.3255	Yes
8	Bgn	na	430	1.255	0.3681	Yes
9	Col5a1	na	463	1.234	0.4098	Yes
10	Col6a2	na	473	1.230	0.4519	Yes
11	Col3a1	na	509	1.216	0.4930	Yes
12	Col6a1	na	984	1.047	0.5205	Yes
13	Itga2	na	1189	0.982	0.5506	Yes
14	Tnc	na	1264	0.961	0.5822	Yes
15	Itga8	na	1266	0.961	0.6152	Yes
16	Itgav	na	1591	0.891	0.6400	Yes
17	Itgb6	na	1848	0.839	0.6642	Yes
18	Itga9	na	2007	0.812	0.6893	Yes
19	Serpine1	na	2045	0.803	0.7162	Yes
20	Col6a6	na	2140	0.788	0.7415	Yes
21	Itgb1	na	2295	0.762	0.7649	Yes
22	Dcn	na	2504	0.737	0.7865	Yes
23	Col6a5	na	2520	0.735	0.8115	Yes
24	Tnxb	na	2617	0.723	0.8346	Yes
25	App	na	2980	0.677	0.8514	Yes
26	Agrn	na	4767	0.512	0.8372	No
27	Fn1	na	6317	0.406	0.8237	No
28	Comp	na	6853	0.375	0.8271	No
29	Vtn	na	7695	0.328	0.8234	No
30	Itgb3	na	8493	0.286	0.8190	No
31	Hapln1	na	9785	0.227	0.8039	No
32	Matn4	na	13714	0.072	0.7367	No
33	Col9a2	na	14293	0.056	0.7283	No
34	Itga2b	na	15098	0.039	0.7154	No
35	Dmp1	na	15512	0.031	0.7091	No
36	Tnr	na	16271	0.019	0.6963	No
37	Matn3	na	17843	0.005	0.6686	No
38	Dspp	na	20633	0.000	0.6191	No
39	Matn1	na	28481	0.000	0.4798	No
40	Tnn	na	29792	0.000	0.4565	No
41	Bcan	na	32918	0.000	0.4010	No
42	Col2a1	na	36527	0.000	0.3370	No
43	Acan	na	45933	0.000	0.1700	No
44	Col9a1	na	47356	-0.006	0.1450	No
45	Col5a3	na	47407	-0.007	0.1443	No
46	Col9a3	na	49707	-0.077	0.1061	No
47	Itga7	na	54326	-0.357	0.0364	No

Fig 2: REACTOME_ECM_PROTEOGLYCANS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: REACTOME_ECM_PROTEOGLYCANS: Random ES distribution   
Gene set null distribution of ES for REACTOME_ECM_PROTEOGLYCANS