#!/bin/bash
##
## Change colors
## - dark yellow is slightly more orange
## - dark red is slightly more red

DRYRUN=${DRYRUN:-"1"};

for t in tracks_junctions.txt track_overlays.txt; do
   echo -e "Adjusting colors in file:${BOLD}${t}${RESET}";
   echo -e "${FCYAN}perl -pi -e 's/188,122,0/217,112,8/;s/157,42,0/167,37,9/;' ${t}${RESET}";
   if [ ".1" == ".${DRYRUN}" ]; then
      echo -e "   ${FRED}Skipping due to ${BOLD}DRYRUN${RESET}";
   else
      perl -pi -e 's/188,122,0/217,112,8/;s/157,42,0/167,37,9/;' ${t};
   fi;
done;

echo -e "";
echo -e "Now run ${BOLD}'cat track_overlays.txt tracks_junctions.txt > trackDb.txt'${RESET}";