#################################### ## track set track Farris_stranded superTrack on show shortLabel Farris stranded RNAseq longLabel Farris stranded RNAseq priority 1000 # ################################## # # Overlay multiple stranded tracks track CA1CB_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel CA1CB longLabel CA1CB showSubtrackColorOnUi on type bigWig priority 1002 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track CA1CB_pos parent CA1CB_stranded bigDataUrl CA1CB_union.STAR_mm10.pos.bw type bigWig color 255,165,0 priority 1002 # ################################## track CA1CB_neg parent CA1CB_stranded bigDataUrl CA1CB_union.STAR_mm10.neg.bw type bigWig color 255,165,0 priority 1002 # ################################## # # Overlay multiple stranded tracks track CA1DE_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel CA1DE longLabel CA1DE showSubtrackColorOnUi on type bigWig priority 1006 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track CA1DE_pos parent CA1DE_stranded bigDataUrl CA1DE_union.STAR_mm10.pos.bw type bigWig color 188,122,0 priority 1006 # ################################## track CA1DE_neg parent CA1DE_stranded bigDataUrl CA1DE_union.STAR_mm10.neg.bw type bigWig color 188,122,0 priority 1006 # ################################## # # Overlay multiple stranded tracks track CA2CB_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel CA2CB longLabel CA2CB showSubtrackColorOnUi on type bigWig priority 1012 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track CA2CB_pos parent CA2CB_stranded bigDataUrl CA2CB_union.STAR_mm10.pos.bw type bigWig color 205,55,0 priority 1012 # ################################## track CA2CB_neg parent CA2CB_stranded bigDataUrl CA2CB_union.STAR_mm10.neg.bw type bigWig color 205,55,0 priority 1012 # ################################## # # Overlay multiple stranded tracks track CA2DE_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel CA2DE longLabel CA2DE showSubtrackColorOnUi on type bigWig priority 1016 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track CA2DE_pos parent CA2DE_stranded bigDataUrl CA2DE_union.STAR_mm10.pos.bw type bigWig color 157,42,0 priority 1016 # ################################## track CA2DE_neg parent CA2DE_stranded bigDataUrl CA2DE_union.STAR_mm10.neg.bw type bigWig color 157,42,0 priority 10016 # ################################## # # Overlay multiple stranded tracks track CA3CB_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel CA3CB longLabel CA3CB showSubtrackColorOnUi on type bigWig priority 1022 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track CA3CB_pos parent CA3CB_stranded bigDataUrl CA3CB_union.STAR_mm10.pos.bw type bigWig color 30,144,255 priority 1022 # ################################## track CA3CB_neg parent CA3CB_stranded bigDataUrl CA3CB_union.STAR_mm10.neg.bw type bigWig color 30,144,255 priority 1022 # ################################## # # Overlay multiple stranded tracks track CA3DE_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel CA3DE longLabel CA3DE showSubtrackColorOnUi on type bigWig priority 1026 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track CA3DE_pos parent CA3DE_stranded bigDataUrl CA3DE_union.STAR_mm10.pos.bw type bigWig color 8,99,188 priority 1026 # ################################## track CA3DE_neg parent CA3DE_stranded bigDataUrl CA3DE_union.STAR_mm10.neg.bw type bigWig color 8,99,188 priority 1026 # ################################## # # Overlay multiple stranded tracks track DGCB_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel DGCB longLabel DGCB showSubtrackColorOnUi on type bigWig priority 1032 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track DGCB_pos parent DGCB_stranded bigDataUrl DGCB_union.STAR_mm10.pos.bw type bigWig color 160,32,240 priority 1032 # ################################## track DGCB_neg parent DGCB_stranded bigDataUrl DGCB_union.STAR_mm10.neg.bw type bigWig color 160,32,240 priority 1032 # ################################## # # Overlay multiple stranded tracks track DGDE_stranded superTrack Farris_stranded full container multiWig aggregate transparentOverlay shortLabel DGDE longLabel DGDE showSubtrackColorOnUi on type bigWig priority 1036 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track DGDE_pos parent DGDE_stranded bigDataUrl DGDE_union.STAR_mm10.pos.bw type bigWig color 113,9,179 priority 1036 # ################################## track DGDE_neg parent DGDE_stranded bigDataUrl DGDE_union.STAR_mm10.neg.bw type bigWig color 113,9,179 priority 1036 ## Beginning of track view track Farris_Junctions compositeTrack on shortLabel Farris Junction Reads longLabel Farris Junction Reads priority 2004 visibility full type bed 3 configurable on subGroup1 view Views \ JUNC=Junctions subGroup2 Group1 Compartment \ CA1=CA1 \ CA2=CA2 \ CA3=CA3 \ DG=DG subGroup3 Group2 CellType \ CB=CB \ DE=DE dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track for RNAseq, junctions data track FarrisJunctionsView parent Farris_Junctions shortLabel RNAseq junction reads view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # junctions track track CA1CB_junctions parent FarrisJunctionsView on bigDataUrl CA1CB_unionJunctions.STAR_mm10.bb shortLabel CA1CB junctions longLabel CA1CB junctions type bigBed 12 visibility pack priority 2004 scoreMin 10 scoreMax 100 color 255,165,0 subGroups Group1=CA1 Group2=CB view=JUNC # junctions track track CA1DE_junctions parent FarrisJunctionsView on bigDataUrl CA1DE_unionJunctions.STAR_mm10.bb shortLabel CA1DE junctions longLabel CA1DE junctions type bigBed 12 visibility pack priority 2008 scoreMin 10 scoreMax 100 color 188,122,0 subGroups Group1=CA1 Group2=DE view=JUNC # junctions track track CA2CB_junctions parent FarrisJunctionsView on bigDataUrl CA2CB_unionJunctions.STAR_mm10.bb shortLabel CA2CB junctions longLabel CA2CB junctions type bigBed 12 visibility pack priority 2014 scoreMin 10 scoreMax 100 color 205,55,0 subGroups Group1=CA2 Group2=CB view=JUNC # junctions track track CA2DE_junctions parent FarrisJunctionsView on bigDataUrl CA2DE_unionJunctions.STAR_mm10.bb shortLabel CA2DE junctions longLabel CA2DE junctions type bigBed 12 visibility pack priority 2018 scoreMin 10 scoreMax 100 color 157,42,0 subGroups Group1=CA2 Group2=DE view=JUNC # junctions track track CA3CB_junctions parent FarrisJunctionsView on bigDataUrl CA3CB_unionJunctions.STAR_mm10.bb shortLabel CA3CB junctions longLabel CA3CB junctions type bigBed 12 visibility pack priority 2024 scoreMin 10 scoreMax 100 color 30,144,255 subGroups Group1=CA3 Group2=CB view=JUNC # junctions track track CA3DE_junctions parent FarrisJunctionsView on bigDataUrl CA3DE_unionJunctions.STAR_mm10.bb shortLabel CA3DE junctions longLabel CA3DE junctions type bigBed 12 visibility pack priority 2028 scoreMin 10 scoreMax 100 color 8,99,188 subGroups Group1=CA3 Group2=DE view=JUNC # junctions track track DGCB_junctions parent FarrisJunctionsView on bigDataUrl DGCB_unionJunctions.STAR_mm10.bb shortLabel DGCB junctions longLabel DGCB junctions type bigBed 12 visibility pack priority 2024 scoreMin 10 scoreMax 100 color 160,32,240 subGroups Group1=DG Group2=CB view=JUNC # junctions track track DGDE_junctions parent FarrisJunctionsView on bigDataUrl DGDE_unionJunctions.STAR_mm10.bb shortLabel DGDE junctions longLabel DGDE junctions type bigBed 12 visibility pack priority 2028 scoreMin 10 scoreMax 100 color 113,9,179 subGroups Group1=DG Group2=DE view=JUNC