## Beginning of track view
track             Farris_Junctions
compositeTrack    on
shortLabel        Farris Junction Reads
longLabel         Farris Junction Reads
priority          2004
visibility        full
type              bed 3
configurable      on
subGroup1         view Views \
   JUNC=Junctions
subGroup2         Group1 Compartment \
    CA1=CA1 \
    CA2=CA2 \
    CA3=CA3 \
    DG=DG
subGroup3         Group2 CellType \
    CB=CB \
    DE=DE
dimensions        dimX=Group1 dimY=Group2
sortOrder         Group1=+ Group2=+  view=+
 
   ## Views track for RNAseq, junctions data
   track             FarrisJunctionsView
   parent            Farris_Junctions
   shortLabel        RNAseq junction reads
   view              JUNC
   visibility        pack
   type              bigBed 12
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   thickDrawItem     on
   scoreFilter       20
   scoreFilterLimits 1:1000
   viewUi            on
 
      # junctions track
      track             CA1CB_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        CA1CB_unionJunctions.STAR_mm10.bb
      shortLabel        CA1CB junctions
      longLabel         CA1CB junctions
      type              bigBed 12
      visibility        pack
      priority          2004
      scoreMin          10
      scoreMax          100
      color             255,165,0
      subGroups         Group1=CA1 Group2=CB view=JUNC
 
      # junctions track
      track             CA1DE_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        CA1DE_unionJunctions.STAR_mm10.bb
      shortLabel        CA1DE junctions
      longLabel         CA1DE junctions
      type              bigBed 12
      visibility        pack
      priority          2008
      scoreMin          10
      scoreMax          100
      color             217,112,8
      subGroups         Group1=CA1 Group2=DE view=JUNC
 
      # junctions track
      track             CA2CB_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        CA2CB_unionJunctions.STAR_mm10.bb
      shortLabel        CA2CB junctions
      longLabel         CA2CB junctions
      type              bigBed 12
      visibility        pack
      priority          2014
      scoreMin          10
      scoreMax          100
      color             205,55,0
      subGroups         Group1=CA2 Group2=CB view=JUNC
 
      # junctions track
      track             CA2DE_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        CA2DE_unionJunctions.STAR_mm10.bb
      shortLabel        CA2DE junctions
      longLabel         CA2DE junctions
      type              bigBed 12
      visibility        pack
      priority          2018
      scoreMin          10
      scoreMax          100
      color             167,37,9
      subGroups         Group1=CA2 Group2=DE view=JUNC
 
      # junctions track
      track             CA3CB_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        CA3CB_unionJunctions.STAR_mm10.bb
      shortLabel        CA3CB junctions
      longLabel         CA3CB junctions
      type              bigBed 12
      visibility        pack
      priority          2024
      scoreMin          10
      scoreMax          100
      color             30,144,255
      subGroups         Group1=CA3 Group2=CB view=JUNC
 
      # junctions track
      track             CA3DE_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        CA3DE_unionJunctions.STAR_mm10.bb
      shortLabel        CA3DE junctions
      longLabel         CA3DE junctions
      type              bigBed 12
      visibility        pack
      priority          2028
      scoreMin          10
      scoreMax          100
      color             8,99,188
      subGroups         Group1=CA3 Group2=DE view=JUNC
 
      # junctions track
      track             DGCB_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        DGCB_unionJunctions.STAR_mm10.bb
      shortLabel        DGCB junctions
      longLabel         DGCB junctions
      type              bigBed 12
      visibility        pack
      priority          2024
      scoreMin          10
      scoreMax          100
      color             160,32,240
      subGroups         Group1=DG Group2=CB view=JUNC
 
      # junctions track
      track             DGDE_junctions
      parent            FarrisJunctionsView on
      bigDataUrl        DGDE_unionJunctions.STAR_mm10.bb
      shortLabel        DGDE junctions
      longLabel         DGDE junctions
      type              bigBed 12
      visibility        pack
      priority          2028
      scoreMin          10
      scoreMax          100
      color             113,9,179
      subGroups         Group1=DG Group2=DE view=JUNC