## Beginning of track view track farris12Dec2014 compositeTrack on shortLabel Farris MiSeq 12Dec2014 longLabel Farris MiSeq 12Dec2014 priority 2200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ PosCtrl1ng=PosCtrl1ng \ HippoRNA300pg=HippoRNA300pg \ PosCtrl300pg=PosCtrl300pg sortOrder Group1=+ view=+ ## Views track coverage data track farris12Dec2014View1 parent farris12Dec2014 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track MES6651ngPositiveControl_coverage parent farris12Dec2014View1 on bigDataUrl MES6651ngPositiveControl_1.sickle.merged.topHat2pe_mm10.bw shortLabel PosCtrl1ng coverage longLabel PosCtrl1ng coverage type bigWig color 205,51,51 priority 2202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=PosCtrl1ng view=COV ## Coverage track track MES665300pgHippoRNA_coverage parent farris12Dec2014View1 on bigDataUrl MES665300pgHippoRNA_1.sickle.merged.topHat2pe_mm10.bw shortLabel HippoRNA300pg coverage longLabel HippoRNA300pg coverage type bigWig color 69,139,0 priority 2204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=HippoRNA300pg view=COV ## Coverage track track MES665300pgPositiveControl_coverage parent farris12Dec2014View1 on bigDataUrl MES665300pgPositiveControl_1.sickle.merged.topHat2pe_mm10.bw shortLabel PosCtrl300pg coverage longLabel PosCtrl300pg coverage type bigWig color 16,78,139 priority 2206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=PosCtrl300pg view=COV ## Views track for RNAseq, junctions data track farris12Dec2014View2 parent farris12Dec2014 shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track MES6651ngPositiveControl_junctions parent farris12Dec2014View2 on bigDataUrl MES6651ngPositiveControl_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel PosCtrl1ng junctions longLabel PosCtrl1ng junctions type bigBed 12 visibility pack priority 2208 scoreMin 10 scoreMax 100 color 205,51,51 subGroups Group1=PosCtrl1ng view=JUNC # combined junctions track track MES665300pgHippoRNA_junctions parent farris12Dec2014View2 on bigDataUrl MES665300pgHippoRNA_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel HippoRNA300pg junctions longLabel HippoRNA300pg junctions type bigBed 12 visibility pack priority 2210 scoreMin 10 scoreMax 100 color 69,139,0 subGroups Group1=HippoRNA300pg view=JUNC # combined junctions track track MES665300pgPositiveControl_junctions parent farris12Dec2014View2 on bigDataUrl MES665300pgPositiveControl_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel PosCtrl300pg junctions longLabel PosCtrl300pg junctions type bigBed 12 visibility pack priority 2212 scoreMin 10 scoreMax 100 color 16,78,139 subGroups Group1=PosCtrl300pg view=JUNC ## Beginning of track view track farris10Feb2015 compositeTrack on shortLabel Farris MiSeq 10Feb2015 longLabel Farris MiSeq 10Feb2015 priority 2400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ JUNC=Junctions subGroup2 Group1 Group1 \ DegradedHC=DegradedHC \ IntactHC=IntactHC \ LiverControl=LiverControl \ NTC=NTC subGroup3 Group2 Group2 \ 10ng=10ng \ 50ng=50ng \ 0ng=0ng dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track farris10Feb2015View1 parent farris10Feb2015 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track MES696DegradedHC10ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696DegradedHC10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel DegradedHC_10ng coverage longLabel DegradedHC_10ng coverage type bigWig color 153,50,204 priority 2402 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=DegradedHC Group2=10ng view=COV ## Coverage track track MES696IntactHC10ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696IntactHC10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel IntactHC_10ng coverage longLabel IntactHC_10ng coverage type bigWig color 0,139,69 priority 2404 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=IntactHC Group2=10ng view=COV ## Coverage track track MES696LiverControl10ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696LiverControl10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel LiverControl_10ng coverage longLabel LiverControl_10ng coverage type bigWig color 205,102,29 priority 2406 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=LiverControl Group2=10ng view=COV ## Coverage track track MES696LiverControl50ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696LiverControl50ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel LiverControl_50ng coverage longLabel LiverControl_50ng coverage type bigWig color 139,69,19 priority 2408 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=LiverControl Group2=50ng view=COV ## Coverage track track MES696NTC_coverage parent farris10Feb2015View1 on bigDataUrl MES696NTC_1.sickle.merged.topHat2pe_mm10.bw shortLabel NTC_0ng coverage longLabel NTC_0ng coverage type bigWig color 255,99,71 priority 2410 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=NTC Group2=0ng view=COV ## Views track for RNAseq, junctions data track farris10Feb2015View2 parent farris10Feb2015 shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track MES696DegradedHC10ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696DegradedHC10ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel DegradedHC_10ng junctions longLabel DegradedHC_10ng junctions type bigBed 12 visibility pack priority 2412 scoreMin 10 scoreMax 100 color 153,50,204 subGroups Group1=DegradedHC Group2=10ng view=JUNC # combined junctions track track MES696IntactHC10ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696IntactHC10ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel IntactHC_10ng junctions longLabel IntactHC_10ng junctions type bigBed 12 visibility pack priority 2414 scoreMin 10 scoreMax 100 color 0,139,69 subGroups Group1=IntactHC Group2=10ng view=JUNC # combined junctions track track MES696LiverControl10ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696LiverControl10ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel LiverControl_10ng junctions longLabel LiverControl_10ng junctions type bigBed 12 visibility pack priority 2416 scoreMin 10 scoreMax 100 color 205,102,29 subGroups Group1=LiverControl Group2=10ng view=JUNC # combined junctions track track MES696LiverControl50ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696LiverControl50ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel LiverControl_50ng junctions longLabel LiverControl_50ng junctions type bigBed 12 visibility pack priority 2418 scoreMin 10 scoreMax 100 color 139,69,19 subGroups Group1=LiverControl Group2=50ng view=JUNC # combined junctions track track MES696NTC_junctions parent farris10Feb2015View2 on bigDataUrl MES696NTC_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel NTC_0ng junctions longLabel NTC_0ng junctions type bigBed 12 visibility pack priority 2420 scoreMin 10 scoreMax 100 color 255,99,71 subGroups Group1=NTC Group2=0ng view=JUNC ## Beginning of track view track farrisNS50063 compositeTrack on shortLabel farrisNS50063 longLabel farrisNS50063 priority 1100 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ NuGEN=NuGEN \ SMARTer=SMARTer subGroup3 Group2 Group2 \ CA2LCM=CA2LCM \ Deg=Deg subGroup4 Group3 Group3 \ Pico=Pico \ Qiagen=Qiagen \ HC10ng=HC10ng dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ Group3=+ view=+ ## Views track coverage data track farrisNS50063View1 parent farrisNS50063 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track NS50063NuGENCA2LCMPico_coverage parent farrisNS50063View1 on bigDataUrl NS50063NuGENCA2LCMPico_1.sickle.merged.topHat2pe_mm10.bw shortLabel NuGEN_CA2LCM_Pico coverage longLabel NuGEN_CA2LCM_Pico coverage type bigWig color 123,31,31 priority 1102 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=NuGEN Group2=CA2LCM Group3=Pico view=COV ## Coverage track track NS50063NuGENCA2LCMQiagen_coverage parent farrisNS50063View1 on bigDataUrl NS50063NuGENCA2LCMQiagen_1.sickle.merged.topHat2pe_mm10.bw shortLabel NuGEN_CA2LCM_Qiagen coverage longLabel NuGEN_CA2LCM_Qiagen coverage type bigWig color 215,110,110 priority 1104 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=NuGEN Group2=CA2LCM Group3=Qiagen view=COV ## Coverage track track NS50063NuGENDegHC10ng_coverage parent farrisNS50063View1 on bigDataUrl NS50063NuGENDegHC10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel NuGEN_Deg_HC10ng coverage longLabel NuGEN_Deg_HC10ng coverage type bigWig color 163,81,18 priority 1106 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=NuGEN Group2=Deg Group3=HC10ng view=COV ## Coverage track track NS50063SMARTerCA2LCMPico_coverage parent farrisNS50063View1 on bigDataUrl NS50063SMARTerCA2LCMPico_1.sickle.merged.topHat2pe_mm10.bw shortLabel SMARTer_CA2LCM_Pico coverage longLabel SMARTer_CA2LCM_Pico coverage type bigWig color 0,83,61 priority 1108 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=SMARTer Group2=CA2LCM Group3=Pico view=COV ## Coverage track track NS50063SMARTerCA2LCMQiagen_coverage parent farrisNS50063View1 on bigDataUrl NS50063SMARTerCA2LCMQiagen_1.sickle.merged.topHat2pe_mm10.bw shortLabel SMARTer_CA2LCM_Qiagen coverage longLabel SMARTer_CA2LCM_Qiagen coverage type bigWig color 63,175,145 priority 1110 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=SMARTer Group2=CA2LCM Group3=Qiagen view=COV ## Coverage track track NS50063SMARTerDegHC10ng_coverage parent farrisNS50063View1 on bigDataUrl NS50063SMARTerDegHC10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel SMARTer_Deg_HC10ng coverage longLabel SMARTer_Deg_HC10ng coverage type bigWig color 41,76,163 priority 1112 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=SMARTer Group2=Deg Group3=HC10ng view=COV