## Beginning of track view
track             NS50112DudekFarris
compositeTrack    on
shortLabel        NS50112DudekFarris
longLabel         NS50112DudekFarris
priority          900
visibility        full
type              bed 3
configurable      on
subGroup1         view Views \
   COV=Coverage \
   PEAK=Peaks \
   JUNC=Junctions
subGroup2         Group1 Group1 \ 
    CellBody=CellBody \
    Dendrites=Dendrites
subGroup3         Group2 Group2 \ 
    All=All \
    PCRx16=PCRx16 \
    PCRx18=PCRx18 \
    PCRx20=PCRx20
subGroup4         Group3 Group3 \ 
    Union=Union \
    m2=m2 \
    m4=m4 \
    m6=m6
dimensions        dimX=Group1 dimY=Group2
sortOrder         Group1=+ Group2=+ Group3=+  view=+
 
   ## Views track for RNAseq, junctions data
   track             NS50112DudekFarrisView2
   parent            NS50112DudekFarris
   shortLabel        RNAseq_junctions
   view              JUNC
   visibility        pack
   type              bigBed 12
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   thickDrawItem     on
   scoreFilter       20
   scoreFilterLimits 1:1000
   viewUi            on
 
      # combined junctions track
      track             CellBody_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        CellBody.TopHat2_mm10.combinedJunctions.bb
      shortLabel        CellBody_All_Union junctions
      longLabel         CellBody_All_Union junctions
      type              bigBed 12
      visibility        pack
      priority          902
      scoreMin          10
      scoreMax          100
      color             123,31,31
      subGroups         Group1=CellBody Group2=All Group3=Union view=JUNC
 
      # combined junctions track
      track             m2CB16_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        m2CB16_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.bb
      shortLabel        CellBody_PCRx16_m2 junctions
      longLabel         CellBody_PCRx16_m2 junctions
      type              bigBed 12
      visibility        pack
      priority          904
      scoreMin          10
      scoreMax          100
      color             163,77,26
      subGroups         Group1=CellBody Group2=PCRx16 Group3=m2 view=JUNC
 
      # combined junctions track
      track             m4CB18_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        m4CB18_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.bb
      shortLabel        CellBody_PCRx18_m4 junctions
      longLabel         CellBody_PCRx18_m4 junctions
      type              bigBed 12
      visibility        pack
      priority          906
      scoreMin          10
      scoreMax          100
      color             118,56,6
      subGroups         Group1=CellBody Group2=PCRx18 Group3=m4 view=JUNC
 
      # combined junctions track
      track             m6CB20_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        m6CB20_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.bb
      shortLabel        CellBody_PCRx20_m6 junctions
      longLabel         CellBody_PCRx20_m6 junctions
      type              bigBed 12
      visibility        pack
      priority          908
      scoreMin          10
      scoreMax          100
      color             64,46,0
      subGroups         Group1=CellBody Group2=PCRx20 Group3=m6 view=JUNC
 
      # combined junctions track
      track             Dendrites_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        Dendrites.TopHat2_mm10.combinedJunctions.bb
      shortLabel        Dendrites_All_Union junctions
      longLabel         Dendrites_All_Union junctions
      type              bigBed 12
      visibility        pack
      priority          910
      scoreMin          10
      scoreMax          100
      color             0,77,55
      subGroups         Group1=Dendrites Group2=All Group3=Union view=JUNC
 
      # combined junctions track
      track             m2DE16_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        m2DE16_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.bb
      shortLabel        Dendrites_PCRx16_m2 junctions
      longLabel         Dendrites_PCRx16_m2 junctions
      type              bigBed 12
      visibility        pack
      priority          912
      scoreMin          10
      scoreMax          100
      color             12,114,163
      subGroups         Group1=Dendrites Group2=PCRx16 Group3=m2 view=JUNC
 
      # combined junctions track
      track             m4DE18_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        m4DE18_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.bb
      shortLabel        Dendrites_PCRx18_m4 junctions
      longLabel         Dendrites_PCRx18_m4 junctions
      type              bigBed 12
      visibility        pack
      priority          914
      scoreMin          10
      scoreMax          100
      color             52,58,163
      subGroups         Group1=Dendrites Group2=PCRx18 Group3=m4 view=JUNC
 
      # combined junctions track
      track             m6DE20_junctions
      parent            NS50112DudekFarrisView2 on
      bigDataUrl        m6DE20_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.bb
      shortLabel        Dendrites_PCRx20_m6 junctions
      longLabel         Dendrites_PCRx20_m6 junctions
      type              bigBed 12
      visibility        pack
      priority          916
      scoreMin          10
      scoreMax          100
      color             61,33,104
      subGroups         Group1=Dendrites Group2=PCRx20 Group3=m6 view=JUNC