## Beginning of track view
track             NS50211STARJunctions
compositeTrack    on
shortLabel        NS50211 STAR Junctions
longLabel         NS50211 STAR Junctions
priority          1150
visibility        full
type              bed 3
configurable      on
subGroup1         view Views \
   COV=Coverage \
   PEAK=Peaks \
   JUNC=Junctions
subGroup2         Group1 Region \ 
    CA1=CA1 \
    CA2=CA2 \
    CA3=CA3 \
    DG=DG
subGroup3         Group2 CellType \ 
    CB=CB \
    DE=DE
dimensions        dimX=Group1 dimY=Group2
sortOrder         Group1=+ Group2=+  view=+
 
   ## Views track for RNAseq, junctions data
   track             NS50211STARJunctionsView2
   parent            NS50211STARJunctions
   shortLabel        RNAseq_junctions
   view              JUNC
   visibility        pack
   type              bigBed 12
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   thickDrawItem     on
   scoreFilter       20
   scoreFilterLimits 1:1000
   viewUi            on
 
      # combined junctions track
      track             CA1_CB_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        CA1_CB.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1152
      scoreMin          10
      scoreMax          100
      color             188,47,47
      subGroups         Group1=CA1 Group2=CB view=JUNC
 
      # combined junctions track
      track             CA1_DE_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        CA1_DE.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1154
      scoreMin          10
      scoreMax          100
      color             207,104,104
      subGroups         Group1=CA1 Group2=DE view=JUNC
 
      # combined junctions track
      track             CA2_CB_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        CA2_CB.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1156
      scoreMin          10
      scoreMax          100
      color             92,49,157
      subGroups         Group1=CA2 Group2=CB view=JUNC
 
      # combined junctions track
      track             CA2_DE_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        CA2_DE.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1158
      scoreMin          10
      scoreMax          100
      color             134,100,185
      subGroups         Group1=CA2 Group2=DE view=JUNC
 
      # combined junctions track
      track             CA3_CB_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        CA3_CB.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1160
      scoreMin          10
      scoreMax          100
      color             0,142,103
      subGroups         Group1=CA3 Group2=CB view=JUNC
 
      # combined junctions track
      track             CA3_DE_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        CA3_DE.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1162
      scoreMin          10
      scoreMax          100
      color             58,174,142
      subGroups         Group1=CA3 Group2=DE view=JUNC
 
      # combined junctions track
      track             DG_CB_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        DG_CB.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1164
      scoreMin          10
      scoreMax          100
      color             218,157,0
      subGroups         Group1=DG Group2=CB view=JUNC
 
      # combined junctions track
      track             DG_DE_junctions
      parent            NS50211STARJunctionsView2 on
      bigDataUrl        DG_DE.STAR_mm10.combinedJunctions.bb
      shortLabel         junctions
      longLabel          junctions
      type              bigBed 12
      visibility        pack
      priority          1166
      scoreMin          10
      scoreMax          100
      color             229,186,76
      subGroups         Group1=DG Group2=DE view=JUNC