## Beginning of track view track farris10Feb2015 compositeTrack on shortLabel Farris MiSeq 10Feb2015 longLabel Farris MiSeq 10Feb2015 priority 2400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ JUNC=Junctions subGroup2 Group1 Group1 \ DegradedHC=DegradedHC \ IntactHC=IntactHC \ LiverControl=LiverControl \ NTC=NTC subGroup3 Group2 Group2 \ 10ng=10ng \ 50ng=50ng \ 0ng=0ng dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track farris10Feb2015View1 parent farris10Feb2015 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track MES696DegradedHC10ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696DegradedHC10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel DegradedHC_10ng coverage longLabel DegradedHC_10ng coverage type bigWig color 153,50,204 priority 2402 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=DegradedHC Group2=10ng view=COV ## Coverage track track MES696IntactHC10ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696IntactHC10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel IntactHC_10ng coverage longLabel IntactHC_10ng coverage type bigWig color 0,139,69 priority 2404 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=IntactHC Group2=10ng view=COV ## Coverage track track MES696LiverControl10ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696LiverControl10ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel LiverControl_10ng coverage longLabel LiverControl_10ng coverage type bigWig color 205,102,29 priority 2406 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=LiverControl Group2=10ng view=COV ## Coverage track track MES696LiverControl50ng_coverage parent farris10Feb2015View1 on bigDataUrl MES696LiverControl50ng_1.sickle.merged.topHat2pe_mm10.bw shortLabel LiverControl_50ng coverage longLabel LiverControl_50ng coverage type bigWig color 139,69,19 priority 2408 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=LiverControl Group2=50ng view=COV ## Coverage track track MES696NTC_coverage parent farris10Feb2015View1 on bigDataUrl MES696NTC_1.sickle.merged.topHat2pe_mm10.bw shortLabel NTC_0ng coverage longLabel NTC_0ng coverage type bigWig color 255,99,71 priority 2410 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=NTC Group2=0ng view=COV ## Views track for RNAseq, junctions data track farris10Feb2015View2 parent farris10Feb2015 shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track MES696DegradedHC10ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696DegradedHC10ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel DegradedHC_10ng junctions longLabel DegradedHC_10ng junctions type bigBed 12 visibility pack priority 2412 scoreMin 10 scoreMax 100 color 153,50,204 subGroups Group1=DegradedHC Group2=10ng view=JUNC # combined junctions track track MES696IntactHC10ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696IntactHC10ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel IntactHC_10ng junctions longLabel IntactHC_10ng junctions type bigBed 12 visibility pack priority 2414 scoreMin 10 scoreMax 100 color 0,139,69 subGroups Group1=IntactHC Group2=10ng view=JUNC # combined junctions track track MES696LiverControl10ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696LiverControl10ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel LiverControl_10ng junctions longLabel LiverControl_10ng junctions type bigBed 12 visibility pack priority 2416 scoreMin 10 scoreMax 100 color 205,102,29 subGroups Group1=LiverControl Group2=10ng view=JUNC # combined junctions track track MES696LiverControl50ng_junctions parent farris10Feb2015View2 on bigDataUrl MES696LiverControl50ng_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel LiverControl_50ng junctions longLabel LiverControl_50ng junctions type bigBed 12 visibility pack priority 2418 scoreMin 10 scoreMax 100 color 139,69,19 subGroups Group1=LiverControl Group2=50ng view=JUNC # combined junctions track track MES696NTC_junctions parent farris10Feb2015View2 on bigDataUrl MES696NTC_1.sickle.merged.topHat2pe_mm10.sorted.junc.bb shortLabel NTC_0ng junctions longLabel NTC_0ng junctions type bigBed 12 visibility pack priority 2420 scoreMin 10 scoreMax 100 color 255,99,71 subGroups Group1=NTC Group2=0ng view=JUNC