BAMO @HD VN:1.4 SO:coordinate @SQ SN:chr1 LN:248387328 @SQ SN:chr2 LN:242696752 @SQ SN:chr3 LN:201105948 @SQ SN:chr4 LN:193574945 @SQ SN:chr5 LN:182045439 @SQ SN:chr6 LN:172126628 @SQ SN:chr7 LN:160567428 @SQ SN:chr8 LN:146259331 @SQ SN:chr9 LN:150617247 @SQ SN:chr10 LN:134758134 @SQ SN:chr11 LN:135127769 @SQ SN:chr12 LN:133324548 @SQ SN:chr13 LN:113566686 @SQ SN:chr14 LN:101161492 @SQ SN:chr15 LN:99753195 @SQ SN:chr16 LN:96330374 @SQ SN:chr17 LN:84276897 @SQ SN:chr18 LN:80542538 @SQ SN:chr19 LN:61707364 @SQ SN:chr20 LN:66210255 @SQ SN:chr21 LN:45090682 @SQ SN:chr22 LN:51324926 @SQ SN:chrX LN:154259566 @SQ SN:chrY LN:62460029 @SQ SN:chrM LN:16569 @PG ID:BBMap PN:BBMap VN:39.01 CL:java -ea -Xmx600g -Xms600g align2.BBMap build=1 overwrite=true fastareadlen=500 -Xmx600g in=NOVA0527_ATAC_11_UL3_PMA_R2_1.trimmed.clean.optdedupe.pcrdedupe.fq.gz in2=NOVA0527_ATAC_11_UL3_PMA_R2_2.trimmed.clean.optdedupe.pcrdedupe.fq.gz ref=/ddn/gs1/shared/dirib/reference_genomes/chm13.v2.0/chm13v2.0.fa path=/ddn/gs1/shared/dirib/reference_genomes/chm13.v2.0/bbmap_chm13v2.0/ out=NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.tmp.bam outu=NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.unmapped.tmp.bam mappedonly=t trimreaddescriptions=t t=75 maxindel=1 inserttag=t intronlen=999999999 ambig=random minid=0.76 pairedonly=t covstats=NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_covstats.txt covhist=NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_covhist.txt ihist=NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_inserthist.txt statsfile=NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_alignmentReport.txt @PG ID:samtools PN:samtools PP:BBMap VN:1.15 CL:samtools view -S -b -h -@ 64 - @PG ID:samtools.1 PN:samtools PP:samtools VN:1.15 CL:samtools view -h NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.tmp.bam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.15 CL:samtools view -Shu @PG ID:samtools.3 PN:samtools PP:samtools.2 VN:1.15 CL:samtools sort -T NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped -@ 75 -o NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.sorted.bam NOVA0527_ATAC_11_UL3_PMA_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bam chr1Îchr20Bwchr3¢ü chr4!¸‰ chr5ÿÊÙ chr6¤qB chr7„’ chr8ƒ½·chr9Ÿ<úchr10ö>chr11Ùâ chr12_òchr13ÞãÄchr14šchr15ëòchr16†â½chr17¡öchr18JûÌchr19d”­chr20ÏIòchr21z°chr22þ'chrXnÐ1 chrY}¹chrM¹@