BAM	  @HD	VN:1.4	SO:coordinate
@SQ	SN:chr1	LN:248387328
@SQ	SN:chr2	LN:242696752
@SQ	SN:chr3	LN:201105948
@SQ	SN:chr4	LN:193574945
@SQ	SN:chr5	LN:182045439
@SQ	SN:chr6	LN:172126628
@SQ	SN:chr7	LN:160567428
@SQ	SN:chr8	LN:146259331
@SQ	SN:chr9	LN:150617247
@SQ	SN:chr10	LN:134758134
@SQ	SN:chr11	LN:135127769
@SQ	SN:chr12	LN:133324548
@SQ	SN:chr13	LN:113566686
@SQ	SN:chr14	LN:101161492
@SQ	SN:chr15	LN:99753195
@SQ	SN:chr16	LN:96330374
@SQ	SN:chr17	LN:84276897
@SQ	SN:chr18	LN:80542538
@SQ	SN:chr19	LN:61707364
@SQ	SN:chr20	LN:66210255
@SQ	SN:chr21	LN:45090682
@SQ	SN:chr22	LN:51324926
@SQ	SN:chrX	LN:154259566
@SQ	SN:chrY	LN:62460029
@SQ	SN:chrM	LN:16569
@PG	ID:BBMap	PN:BBMap	VN:38.96	CL:java -ea -Xmx400g -Xms400g align2.BBMap build=1 overwrite=true fastareadlen=500 -Xmx400g in=NS51360_14_Dex_ktGR_R2_1.trimmed.clean.optdedupe.pcrdedupe.fq.gz in2=NS51360_14_Dex_ktGR_R2_2.trimmed.clean.optdedupe.pcrdedupe.fq.gz ref=/ddn/gs1/shared/dirib/reference_genomes/chm13.v2.0/chm13v2.0.fa path=/ddn/gs1/shared/dirib/reference_genomes/chm13.v2.0/bbmap_chm13v2.0/ out=NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.tmp.bam outu=NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.unmapped.tmp.bam mappedonly=t trimreaddescriptions=t t=75 maxindel=1 inserttag=t intronlen=999999999 ambig=random minid=0.76 pairedonly=t covstats=NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_covstats.txt covhist=NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_covhist.txt ihist=NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_inserthist.txt statsfile=NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bbmap_alignmentReport.txt
@PG	ID:samtools	PN:samtools	PP:BBMap	VN:1.15	CL:samtools view -S -b -h -@ 64 -
@PG	ID:samtools.1	PN:samtools	PP:samtools	VN:1.15	CL:samtools view -h NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.tmp.bam
@PG	ID:samtools.2	PN:samtools	PP:samtools.1	VN:1.15	CL:samtools view -Shu
@PG	ID:samtools.3	PN:samtools	PP:samtools.2	VN:1.15	CL:samtools sort -T NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped -@ 75 -o NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.sorted.bam NS51360_14_Dex_ktGR_R2.trimmed.clean.optdedupe.pcrdedupe.T2T.mapped.bam
      chr1  Î   chr2 0Bw   chr3 ¢ü   chr4 !¸‰   chr5 ÿÊÙ
   chr6 ¤qB
   chr7 „’	   chr8 ƒ½·   chr9 Ÿ<ú   chr10 ö>   chr11 Ùâ   chr12 _ò   chr13 ÞãÄ   chr14 š   chr15 ëò   chr16 †â½   chr17 ¡ö   chr18 JûÌ   chr19 d”­   chr20 ÏIò   chr21 z°   chr22 þ'   chrX nÐ1	   chrY }¹   chrM ¹@  