##================================================================== ## Beginning of track view of Dataset NG77 (mm10) ##------------------------------------------------------------------ ## mm10 NG77 Unstranded RNAseq track NG77OHT compositeTrack on shortLabel NG77OHT Unstranded RNAseq longLabel mm10 Unstranded RNAseq project NG77OHT priority 1000 visibility full configurable on type bed 3 subGroup1 view Views \ COV=Coverage \ JUNC=Junctions subGroup2 Group1 Group1 \ WT=WT \ KO=KO subGroup3 Group2 Group2 \ OHT0nM=OHT0nM \ OHT1000nM=OHT1000nM \ OHT100nM=OHT100nM \ OHT10nM=OHT10nM subGroup4 Group3 Group3 \ 48h=48h dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ Group3=- view=+ ## ==================== ## Views track coverage data track NG77OHTView1 parent NG77OHT shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewUi on ##-------- ## Coverage track track NG77_OHT0nM_48h_WT_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT0nM_48h_WT_1_str1.bw shortLabel NG77_OHT0nM_48h_WT_1_str1.s0_coverage longLabel NG77_OHT0nM_48h_WT_1_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 1012 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=OHT0nM Group3=s1Pos view=COV ##-------- ## Coverage track track NG77_OHT0nM_48h_KO_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT0nM_48h_KO_1_str1.bw shortLabel NG77_OHT0nM_48h_KO_1_str1.s0_coverage longLabel NG77_OHT0nM_48h_KO_1_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 1022 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=OHT0nM Group3=s1Pos view=COV ##-------- ## Coverage track track NG77_OHT1000nM_48h_WT_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT1000nM_48h_WT_1_str1.bw shortLabel NG77_OHT1000nM_48h_WT_1_str1.s0_coverage longLabel NG77_OHT1000nM_48h_WT_1_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 1032 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=OHT1000nM Group3=s1Pos view=COV ##-------- ## Coverage track track NG77_OHT1000nM_48h_KO_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT1000nM_48h_KO_1_str1.bw shortLabel NG77_OHT1000nM_48h_KO_1_str1.s0_coverage longLabel NG77_OHT1000nM_48h_KO_1_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 1042 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=OHT1000nM Group3=s1Pos view=COV ##-------- ## Coverage track track NG77_OHT100nM_48h_WT_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT100nM_48h_WT_1_str1.bw shortLabel NG77_OHT100nM_48h_WT_1_str1.s0_coverage longLabel NG77_OHT100nM_48h_WT_1_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 1052 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=OHT100nM Group3=s1Pos view=COV ##-------- ## Coverage track track NG77_OHT100nM_48h_KO_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT100nM_48h_KO_1_str1.bw shortLabel NG77_OHT100nM_48h_KO_1_str1.s0_coverage longLabel NG77_OHT100nM_48h_KO_1_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 1062 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=OHT100nM Group3=s1Pos view=COV ##-------- ## Coverage track track NG77_OHT10nM_48h_WT_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT10nM_48h_WT_1_str1.bw shortLabel NG77_OHT10nM_48h_WT_1_str1.s0_coverage longLabel NG77_OHT10nM_48h_WT_1_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 1072 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=OHT10nM Group3=s1Pos view=COV ##-------- ## Coverage track track NG77_OHT10nM_48h_KO_1_str1.s0_coverage parent NG77OHTView1 on bigDataUrl NG77_OHT10nM_48h_KO_1_str1.bw shortLabel NG77_OHT10nM_48h_KO_1_str1.s0_coverage longLabel NG77_OHT10nM_48h_KO_1_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 1082 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=OHT10nM Group3=s1Pos view=COV ## ==================== ## Views track for RNAseq, junctions data track NG77OHTView2 parent NG77OHT shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on ##-------- # combined junctions track track NG77_OHT0nM_48h_WT_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT0nM_48h_WT_1.bb shortLabel NG77_OHT0nM_48h_WT_1 junctions longLabel NG77_OHT0nM_48h_WT_1 junctions type bigBed 12 visibility pack priority 1092 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=OHT0nM Group3=Unstranded view=JUNC ##-------- # combined junctions track track NG77_OHT0nM_48h_KO_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT0nM_48h_KO_1.bb shortLabel NG77_OHT0nM_48h_KO_1 junctions longLabel NG77_OHT0nM_48h_KO_1 junctions type bigBed 12 visibility pack priority 1102 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=OHT0nM Group3=Unstranded view=JUNC ##-------- # combined junctions track track NG77_OHT1000nM_48h_WT_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT1000nM_48h_WT_1.bb shortLabel NG77_OHT1000nM_48h_WT_1 junctions longLabel NG77_OHT1000nM_48h_WT_1 junctions type bigBed 12 visibility pack priority 1112 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=OHT1000nM Group3=Unstranded view=JUNC ##-------- # combined junctions track track NG77_OHT1000nM_48h_KO_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT1000nM_48h_KO_1.bb shortLabel NG77_OHT1000nM_48h_KO_1 junctions longLabel NG77_OHT1000nM_48h_KO_1 junctions type bigBed 12 visibility pack priority 1122 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=OHT1000nM Group3=Unstranded view=JUNC ##-------- # combined junctions track track NG77_OHT100nM_48h_WT_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT100nM_48h_WT_1.bb shortLabel NG77_OHT100nM_48h_WT_1 junctions longLabel NG77_OHT100nM_48h_WT_1 junctions type bigBed 12 visibility pack priority 1132 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=OHT100nM Group3=Unstranded view=JUNC ##-------- # combined junctions track track NG77_OHT100nM_48h_KO_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT100nM_48h_KO_1.bb shortLabel NG77_OHT100nM_48h_KO_1 junctions longLabel NG77_OHT100nM_48h_KO_1 junctions type bigBed 12 visibility pack priority 1142 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=OHT100nM Group3=Unstranded view=JUNC ##-------- # combined junctions track track NG77_OHT10nM_48h_WT_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT10nM_48h_WT_1.bb shortLabel NG77_OHT10nM_48h_WT_1 junctions longLabel NG77_OHT10nM_48h_WT_1 junctions type bigBed 12 visibility pack priority 1152 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=OHT10nM Group3=Unstranded view=JUNC ##-------- # combined junctions track track NG77_OHT10nM_48h_KO_1_junctions parent NG77OHTView2 on bigDataUrl NG77_OHT10nM_48h_KO_1.bb shortLabel NG77_OHT10nM_48h_KO_1 junctions longLabel NG77_OHT10nM_48h_KO_1 junctions type bigBed 12 visibility pack priority 1162 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=OHT10nM Group3=Unstranded view=JUNC