##==================================================================
## Beginning of track view of Dataset NOV0086 (erccCmASM9120v1)
##------------------------------------------------------------------
## erccCmASM9120v1 NOV0086 Stranded RNAseq  
track             NOV0086AlgaeStranded
compositeTrack    on
shortLabel        NOV0086AlgaeStranded Stranded RNAseq
longLabel         erccCmASM9120v1 Stranded RNAseq project NOV0086AlgaeStranded
priority          1000
visibility        full
configurable      on
type              bed 3
subGroup1         view Views \
  COV=Coverage \
  JUNC=Junctions
subGroup2         Group1 Group1 \ 
  WT1=WT1 \ 
  tttp1=tttp1 
subGroup3         Group2 Group2 \ 
  NA=NA 
subGroup4         Group3 Group3 \ 
  NA=NA 
dimensions        dimX=Group1 dimY=Group2
sortOrder         Group1=+ Group2=+ Group3=- view=+

   ## ====================
   ## Views track coverage data
   track             NOV0086AlgaeStrandedView1
   parent            NOV0086AlgaeStranded
   shortLabel        Coverage
   view              COV
   visibility        full
   type              bigWig
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:60:8
   smoothingWindow   2
   transformFunc     NONE
   windowingFunction mean+whiskers
   gridDefault       on
   autoScale         on
   viewUi            on

      ##--------
      
      ## Coverage track
      track             WT1MA2GxRep01_str2_coverage
      parent            NOV0086AlgaeStrandedView1 on
      bigDataUrl        WT1MA2GxRep01_str2.bw
      shortLabel        WT1MA2GxRep01_str2_coverage
      longLabel         WT1MA2GxRep01_str2_coverage stranded str2 bw
      type              bigWig
      color             76,0,153
      priority          1012
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      autoScale         on
      visibility        hide
      subGroups         Group1=WT1 Group2=NA Group3=str2 view=COV

      ## Coverage track
      track             WT1MA2GxRep01_str1_coverage
      parent            NOV0086AlgaeStrandedView1 on
      bigDataUrl        WT1MA2GxRep01_str1.bw
      shortLabel        WT1MA2GxRep01_str1_coverage
      longLabel         WT1MA2GxRep01_str1_coverage stranded str1 bw
      type              bigWig
      color             153,51,255
      priority          1014
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      autoScale         on
      visibility        hide
      subGroups         Group1=WT1 Group2=NA Group3=str1 view=COV

      ##--------
      
      ## Coverage track
      track             tttp1MA2GxRep01_str2_coverage
      parent            NOV0086AlgaeStrandedView1 on
      bigDataUrl        tttp1MA2GxRep01_str2.bw
      shortLabel        tttp1MA2GxRep01_str2_coverage
      longLabel         tttp1MA2GxRep01_str2_coverage stranded str2 bw
      type              bigWig
      color             153,0,76
      priority          1022
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      autoScale         on
      visibility        hide
      subGroups         Group1=tttp1 Group2=NA Group3=str2 view=COV

      ## Coverage track
      track             tttp1MA2GxRep01_str1_coverage
      parent            NOV0086AlgaeStrandedView1 on
      bigDataUrl        tttp1MA2GxRep01_str1.bw
      shortLabel        tttp1MA2GxRep01_str1_coverage
      longLabel         tttp1MA2GxRep01_str1_coverage stranded str1 bw
      type              bigWig
      color             255,0,255
      priority          1024
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      autoScale         on
      visibility        hide
      subGroups         Group1=tttp1 Group2=NA Group3=str1 view=COV

   ## ====================
   ## Views track for RNAseq, junctions data
   track             NOV0086AlgaeStrandedView2
   parent            NOV0086AlgaeStranded
   shortLabel        RNAseq_junctions
   view              JUNC
   visibility        pack
   type              bigBed 12
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   thickDrawItem     on
   scoreFilter       20
   scoreFilterLimits 1:1000
   viewUi            on

      ##--------
      # combined junctions track
      track             WT1MA2GxRep01_junctions
      parent            NOV0086AlgaeStrandedView2 on
      bigDataUrl        WT1MA2GxRep01.bb
      shortLabel        WT1MA2GxRep01 junctions
      longLabel         WT1MA2GxRep01 junctions
      type              bigBed 12
      visibility        pack
      priority          1032
      scoreMin          10
      scoreMax          100
      color             147,37,37
      subGroups         Group1=WT1 Group2=NA Group3=Stranded view=JUNC

      ##--------
      # combined junctions track
      track             tttp1MA2GxRep01_junctions
      parent            NOV0086AlgaeStrandedView2 on
      bigDataUrl        tttp1MA2GxRep01.bb
      shortLabel        tttp1MA2GxRep01 junctions
      longLabel         tttp1MA2GxRep01 junctions
      type              bigBed 12
      visibility        pack
      priority          1042
      scoreMin          10
      scoreMax          100
      color             147,37,37
      subGroups         Group1=tttp1 Group2=NA Group3=Stranded view=JUNC

##--------
## Beginning of gene track view
track Annotation
bigDataUrl genome.bb 
shortLabel C.merolae GTF
longLabel C.merolae GTF with type bigBed
type bigBed 12
visibility full
searchIndex name