track uniqueGenomicRegions compositeTrack on shortLabel Unique Genomic Regions longLabel Unique Genomic Regions type bigBed allButtonPair on centerLabelsDense on dragAndDrop on visibility dense priority 100 track uniqueGenomicRegions_CDS parent uniqueGenomicRegions on bigDataUrl hg18_refGene_uniqueGenomicRegions_CDS_27sep2012.bb shortLabel Unique CDS longLabel Unique CDS regions type bigBed color 189,85,110 visibility dense priority 101 track uniqueGenomicRegions_fiveUtr parent uniqueGenomicRegions on bigDataUrl hg18_refGene_uniqueGenomicRegions_fiveUtr_27sep2012.bb shortLabel Unique fiveUtr longLabel Unique fiveUtr regions type bigBed color 191,134,6 visibility dense priority 102 track uniqueGenomicRegions_threeUtr parent uniqueGenomicRegions on bigDataUrl hg18_refGene_uniqueGenomicRegions_threeUtr_27sep2012.bb shortLabel Unique threeUtr longLabel Unique threeUtr regions type bigBed color 70,107,0 visibility dense priority 103 track uniqueGenomicRegions_exons parent uniqueGenomicRegions on bigDataUrl hg18_refGene_uniqueGenomicRegions_exons_27sep2012.bb shortLabel Unique exons longLabel Unique exons regions type bigBed color 0,142,89 visibility dense priority 104 track uniqueGenomicRegions_promoters parent uniqueGenomicRegions on bigDataUrl hg18_refGene_uniqueGenomicRegions_promoters_27sep2012.bb shortLabel Unique promoters longLabel Unique promoters regions type bigBed color 0,168,188 visibility dense priority 105 track uniqueGenomicRegions_introns parent uniqueGenomicRegions on bigDataUrl hg18_refGene_uniqueGenomicRegions_introns_27sep2012.bb shortLabel Unique introns longLabel Unique introns regions type bigBed color 33,90,186 visibility dense priority 106 track uniqueGenomicRegions_intergenic parent uniqueGenomicRegions on bigDataUrl hg18_refGene_uniqueGenomicRegions_intergenic_27sep2012.bb shortLabel Unique intergenic longLabel Unique intergenic regions type bigBed color 176,83,174 visibility dense priority 107 track uniqueGenomicRegionsOL container multiWig aggregate transparentOverlay shortLabel Layered Genomic Regions longLabel Unique Genomic Regions showSubtrackColorOnUi on type bigWig viewLimits 0:1 maxHeightPixels 100:48:8 alwaysZero off graphTypeDefault bar transformFunc NONE windowingFunction maximum visibility full priority 200 track uniqueGenomicRegions_CDS_OL bigDataUrl hg18_refGene_uniqueGenomicRegions_CDS_27sep2012.bw type bigWig parent uniqueGenomicRegionsOL color 189,85,110 priority 201 track uniqueGenomicRegions_fiveUtr_OL bigDataUrl hg18_refGene_uniqueGenomicRegions_fiveUtr_27sep2012.bw type bigWig parent uniqueGenomicRegionsOL color 191,134,6 priority 202 track uniqueGenomicRegions_threeUtr_OL bigDataUrl hg18_refGene_uniqueGenomicRegions_threeUtr_27sep2012.bw type bigWig parent uniqueGenomicRegionsOL color 70,107,0 priority 203 track uniqueGenomicRegions_exons_OL bigDataUrl hg18_refGene_uniqueGenomicRegions_exons_27sep2012.bw type bigWig parent uniqueGenomicRegionsOL color 0,142,89 priority 204 track uniqueGenomicRegions_promoters_OL bigDataUrl hg18_refGene_uniqueGenomicRegions_promoters_27sep2012.bw type bigWig parent uniqueGenomicRegionsOL color 0,168,188 priority 205 track uniqueGenomicRegions_introns_OL bigDataUrl hg18_refGene_uniqueGenomicRegions_introns_27sep2012.bw type bigWig parent uniqueGenomicRegionsOL color 33,90,186 priority 206 track uniqueGenomicRegions_intergenic_OL bigDataUrl hg18_refGene_uniqueGenomicRegions_intergenic_27sep2012.bw type bigWig parent uniqueGenomicRegionsOL color 176,83,174 priority 207 track agilentProbes compositeTrack on shortLabel Agilent microarray probes longLabel Agilent microarray probes type bam allButtonPair on centerLabelsDense on dragAndDrop on visibility pack priority 500 track agilentHsa_4x44_tophat2 parent agilentProbes on bigDataUrl agilentHsaProbes_07may2013.topHat2se_hg18.bam shortLabel Agilent 4x44k probes longLabel Agilent 4x44k probes type bam color 189,35,35 visibility pack priority 501 track agilentHsa_1A_17k_tophat2 parent agilentProbes on bigDataUrl agilentHsaProbes-arrayV1_13may2013.topHat2se_hg18.bam shortLabel Agilent 1A 17k probes longLabel Agilent 1A 17k probes type bam color 35,35,189 visibility pack priority 502 ############################################### ## Euskirchen GM, ... Snyder, M.; PLoS Genetics 2013 track snyderBrg1tracks compositeTrack on shortLabel Euskirchen et al SWI-SNF tracks longLabel Euskirchen et al SWI-SNF tracks type bigBed allButtonPair on centerLabelsDense on dragAndDrop on visibility dense priority 1100 track GSM601398_Ini1_HeLa_peaks_stringent parent snyderBrg1tracks on bigDataUrl GSM601398_Ini1HeLa-peaks-stringent.bb shortLabel Ini1 HeLa peaks stringent longLabel Ini1 HeLa peaks stringent - GSM601398 type bigBed color 176,32,36 visibility dense priority 1101 track GSM601398_Ini1_HeLa_peaks parent snyderBrg1tracks on bigDataUrl GSM601398_Ini1HeLa-peaks.bb shortLabel Ini1 HeLa peaks longLabel Ini1 HeLa peaks - GSM601398 type bigBed color 117,21,24 visibility dense priority 1102 track GSM601399_Brg1_HeLa_peaks_stringent parent snyderBrg1tracks on bigDataUrl GSM601399_Brg1HeLa-peaks-stringent.bb shortLabel Brg1 HeLa peaks stringent longLabel Brg1 HeLa peaks stringent - GSM601399 type bigBed color 255,148,0 visibility dense priority 1103 track GSM601399_Brg1_HeLa_peaks parent snyderBrg1tracks on bigDataUrl GSM601399_Brg1HeLa-peaks.bb shortLabel Brg1 HeLa peaks longLabel Brg1 HeLa peaks - GSM601399 type bigBed color 170,99,0 visibility dense priority 1104 track GSM601400_BAF155_HeLa_peaks_stringent parent snyderBrg1tracks on bigDataUrl GSM601400_BAF155HeLa-peaks-stringent.bb shortLabel BAF155 HeLa peaks stringent longLabel BAF155 HeLa peaks stringent - GSM601400 type bigBed color 57,167,111 visibility dense priority 1105 track GSM601400_BAF155_HeLa_peaks parent snyderBrg1tracks on bigDataUrl GSM601400_BAF155HeLa-peaks.bb shortLabel BAF155 HeLa peaks longLabel BAF155 HeLa peaks - GSM601400 type bigBed color 38,111,74 visibility dense priority 1106 track GSM601401_BAF170_HeLa_peaks_stringent parent snyderBrg1tracks on bigDataUrl GSM601401_BAF170HeLa-peaks-stringent.bb shortLabel BAF170 HeLa peaks stringent longLabel BAF170 HeLa peaks stringent - GSM601401 type bigBed color 124,24,169 visibility dense priority 1107 track GSM601401_BAF170_HeLa_peaks parent snyderBrg1tracks on bigDataUrl GSM601401_BAF170HeLa-peaks.bb shortLabel BAF170 HeLa peaks longLabel BAF170 HeLa peaks - GSM601401 type bigBed color 83,16,113 visibility dense priority 1108 ################################################## ## Dr. Valerie Davis GR ChIP-seq experiment tracks track VDavisGRchipSeqPeaks compositeTrack on shortLabel Davis GR ChIP-seq peaks longLabel Davis GR ChIP-seq peaks type bigBed allButtonPair on centerLabelsDense on dragAndDrop on visibility dense priority 500 track VDavisGRchipSeqPeaks_Dex18hr parent VDavisGRchipSeqPeaks on bigDataUrl VDavis_peakFinder_DexVsUntr_18hr_hg18.bb shortLabel GR Dex-Untr 18hr longLabel GR Dex-Untr 18hr type bigBed color 40,50,150 visibility dense priority 501 track VDavisGRchipSeqPeaks_MgDex18hr parent VDavisGRchipSeqPeaks on bigDataUrl VDavis_peakFinder_MgDexVsUntr_18hr_hg18.bb shortLabel GR MgDex-Untr 18hr longLabel GR MgDex-Untr 18hr type bigBed color 120,50,130 visibility dense priority 502 ## Colors for the 4 treatments: ## UNTR #color -70,70,70 #color 90,90,90 ## DEX #color -0,80,153 #color 30,40,200 ## MG #color -0,119,34 #color 10,130,0 ## MGDEX #color -119,40,153 #color 120,0,150 ## colors: 90,90,90 30,40,200 10,130,0 120,0,150 track VDavisGRchipSeqDepth compositeTrack on shortLabel Davis GR ChIP-seq depth longLabel Davis GR ChIP-seq depth type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 600 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full track VDavisGRchipSeqDepth_Dex18hr parent VDavisGRchipSeqDepth on bigDataUrl VDavis_GRchipSeq_Dex_18hr_hg18.bw shortLabel GR Dex-Untr 18hr longLabel GR Dex-Untr 18hr type bigWig color 40,50,150 priority 602 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction maximum gridDefault on autoScale on visibility full track VDavisGRchipSeqDepth_MgDex18hr parent VDavisGRchipSeqDepth on bigDataUrl VDavis_GRchipSeq_MgDex_18hr_hg18.bw shortLabel GR MgDex-Untr 18hr longLabel GR MgDex-Untr 18hr type bigWig color 120,50,130 priority 602 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction maximum gridDefault on autoScale on visibility full