##################################################
## Dr. Valerie Davis GR ChIP-seq experiment tracks
track             VDavisGRchipSeqPeaks
compositeTrack    on
shortLabel        Davis GR ChIP-seq peaks
longLabel         Davis GR ChIP-seq peaks
type              bigBed
allButtonPair     on
centerLabelsDense on
dragAndDrop       on
visibility        dense
priority          500

   track             VDavisGRchipSeqPeaks_Dex18hr
   parent            VDavisGRchipSeqPeaks on
   bigDataUrl        VDavis_peakFinder_DexVsUntr_18hr_hg18.bb
   shortLabel        GR Dex-Untr 18hr
   longLabel         GR Dex-Untr 18hr
   type              bigBed
   color             40,50,150
   visibility        dense
   priority          501

   track             VDavisGRchipSeqPeaks_MgDex18hr
   parent            VDavisGRchipSeqPeaks on
   bigDataUrl        VDavis_peakFinder_MgDexVsUntr_18hr_hg18.bb
   shortLabel        GR MgDex-Untr 18hr
   longLabel         GR MgDex-Untr 18hr
   type              bigBed
   color             120,50,130
   visibility        dense
   priority          502

## Colors for the 4 treatments:
## UNTR
#color      -70,70,70
#color      90,90,90
## DEX
#color      -0,80,153
#color      30,40,200
## MG
#color      -0,119,34
#color      10,130,0
## MGDEX
#color      -119,40,153
#color       120,0,150
## colors: 90,90,90 30,40,200 10,130,0 120,0,150

track             VDavisGRchipSeqDepth
compositeTrack    on
shortLabel        Davis GR ChIP-seq depth
longLabel         Davis GR ChIP-seq depth
type              bigWig
allButtonPair     on
centerLabelsDense on
dragAndDrop       on
priority          600
alwaysZero        on
graphTypeDefault  bar
maxHeightPixels   100:24:8
smoothingWindow   2
transformFunc     NONE
windowingFunction maximum
gridDefault       on
viewLimits        0:20
visibility        full

   track             VDavisGRchipSeqDepth_Dex18hr
   parent            VDavisGRchipSeqDepth on
   bigDataUrl        VDavis_GRchipSeq_Dex_18hr_hg18.bw
   shortLabel        GR Dex-Untr 18hr
   longLabel         GR Dex-Untr 18hr
   type              bigWig
   color             40,50,150
   priority          602
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:24:8
   smoothingWindow   8
   transformFunc     NONE
   windowingFunction maximum
   gridDefault       on
   autoScale         on
   visibility        full

   track             VDavisGRchipSeqDepth_MgDex18hr
   parent            VDavisGRchipSeqDepth on
   bigDataUrl        VDavis_GRchipSeq_MgDex_18hr_hg18.bw
   shortLabel        GR MgDex-Untr 18hr
   longLabel         GR MgDex-Untr 18hr
   type              bigWig
   color             120,50,130
   priority          602
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:24:8
   smoothingWindow   8
   transformFunc     NONE
   windowingFunction maximum
   gridDefault       on
   autoScale         on
   visibility        full