#!/usr/bin/perl

$useColor = "0,0,204";
$useColorInput = "102,102,102";

#make supertrack for ChIP-seq data
$prio = 250;
open(OUT, ">trackDb.24hAS_ChIPseq.txt");
print OUT "track\tKJeon_24hAS.ChIP\n";
print OUT "superTrack on show\n";
print OUT "shortLabel\t24hAS ChIP-seq\n";
print OUT "longLabel\t24hAS ChIP-seq tracks\n\n";

print OUT "   track\t24hAS_doxPlus-IP\n";
print OUT "   parent\tKJeon_24hAS.ChIP\n";
print OUT "   type\tbigWig\n";
print OUT "   shortLabel\t24hAS doxPlus IP\n";
print OUT "   longLabel\t24hAS doxPlus IP\n";
print OUT "   color\t$useColor\n";
print OUT "   maxHeightPixels\t150:40:11\n";
print OUT "   bigDataUrl\tDATA/24hAS-doxPlus-IP.hg19.bwt.rmdup.ext200.norm10M.bigWig\n";
print OUT "   visibility\tfull\n\n";

print OUT "   track\t24hAS_doxMinus-IP\n";
print OUT "   parent\tKJeon_24hAS.ChIP\n";
print OUT "   type\tbigWig\n";
print OUT "   shortLabel\t24hAS doxMinus IP\n";
print OUT "   longLabel\t24hAS doxMinus IP\n";
print OUT "   color\t$useColor\n";
print OUT "   maxHeightPixels\t150:40:11\n";
print OUT "   bigDataUrl\tDATA/24hAS-doxMinus-IP.hg19.bwt.rmdup.ext200.norm10M.bigWig\n";
print OUT "   visibility\tfull\n\n";

print OUT "   track\t24hAS_doxPlus-input\n";
print OUT "   parent\tKJeon_24hAS.ChIP\n";
print OUT "   type\tbigWig\n";
print OUT "   shortLabel\t24hAS doxPlus input\n";
print OUT "   longLabel\t24hAS doxPlus input\n";
print OUT "   color\t$useColorInput\n";
print OUT "   maxHeightPixels\t150:40:11\n";
print OUT "   bigDataUrl\tDATA/24hAS-doxPlus-Input.hg19.bwt.rmdup.ext200.norm10M.bigWig\n";
print OUT "   visibility\tfull\n\n";

print OUT "   track\t24hAS_doxMinus-input\n";
print OUT "   parent\tKJeon_24hAS.ChIP\n";
print OUT "   type\tbigWig\n";
print OUT "   shortLabel\t24hAS doxMinus input\n";
print OUT "   longLabel\t24hAS doxMinus input\n";
print OUT "   color\t$useColorInput\n";
print OUT "   maxHeightPixels\t150:40:11\n";
print OUT "   bigDataUrl\tDATA/24hAS-doxMinus-Input.hg19.bwt.rmdup.ext200.norm10M.bigWig\n";
print OUT "   visibility\tfull\n\n";

print OUT "   track\t24hAS_doxPlus-IP_peaks\n";
print OUT "   parent\tKJeon_24hAS.ChIP\n";
print OUT "   type\tbigBed 4\n";
print OUT "   shortLabel\t24hAS_doxPlus-IP Peaks\n";
print OUT "   longLabel\t24hAS_doxPlus-IP Peaks, HOMER FDR e-5\n";
print OUT "   color\t$useColor\n";
print OUT "   bigDataUrl\tDATA/24hAS-doxPlus-IP.homer-peakcalls.FDR_e-5.300bp.bigBed\n";
print OUT "   visibility\tdense\n\n";

print OUT "   track\t24hAS_doxMinus-IP_peaks\n";
print OUT "   parent\tKJeon_24hAS.ChIP\n";
print OUT "   type\tbigBed 4\n";
print OUT "   shortLabel\t24hAS_doxMinus-IP Peaks\n";   
print OUT "   longLabel\t24hAS_doxMinus-IP Peaks, HOMER FDR e-5\n";
print OUT "   color\t$useColor\n";
print OUT "   bigDataUrl\tDATA/24hAS-doxMinus-IP.homer-peakcalls.FDR_e-5.300bp.bigBed\n";
print OUT "   visibility\tdense\n\n";

close(OUT);