#!/usr/bin/perl

$useColor = "0,0,204";
$useColorInput = "102,102,102";

#make supertrack for ChIP-seq data
$prio = 200;
open(OUT, ">trackDb.ASI_ChIPseq.txt");
print OUT "track\tKJeon_ASI.ChIP\n";
print OUT "superTrack on show\n";
print OUT "shortLabel\tASI ChIP-seq\n";
print OUT "longLabel\tASI ChIP-seq tracks\n\n";

print OUT "   track\tAstroG3IP\n";
print OUT "   parent\tKJeon_ASI.ChIP\n";
print OUT "   type\tbigWig\n";
print OUT "   shortLabel\tAstro Glis3 IP\n";
print OUT "   longLabel\tAstro Glis3 IP\n";
print OUT "   color\t$useColor\n";
print OUT "   maxHeightPixels\t150:40:11\n";
print OUT "   bigDataUrl\tDATA/Astro_IP.hg19.bwt.rmdup.ext200.norm10M.bigWig\n";
print OUT "   visibility\tfull\n\n";

print OUT "   track\tAstroInput\n";
print OUT "   parent\tKJeon_ASI.ChIP\n";
print OUT "   type\tbigWig\n";
print OUT "   shortLabel\tAstro Input\n";
print OUT "   longLabel\tAstro Input\n";
print OUT "   color\t$useColorInput\n";
print OUT "   maxHeightPixels\t150:40:11\n";
print OUT "   bigDataUrl\tDATA/Astro_Input.hg19.bwt.rmdup.ext200.norm10M.bigWig\n";
print OUT "   visibility\tfull\n\n";

print OUT "   track\tAstroPkDefaultAll\n";
print OUT "   parent\tKJeon_ASI.ChIP\n";
print OUT "   type\tbigBed 4\n";
print OUT "   shortLabel\tAstroGlis3 Peaks\n";
print OUT "   longLabel\tAstroGlis3 Peaks, HOMER default, all\n";
print OUT "   color\t$useColor\n";
print OUT "   bigDataUrl\tDATA/Astro_Glis3.homer-peakcalls.default.bigBed\n";
print OUT "   visibility\tdense\n\n";

print OUT "   track\tAstroPkDefaultMotif\n";
print OUT "   parent\tKJeon_ASI.ChIP\n";
print OUT "   type\tbigBed 4\n";
print OUT "   shortLabel\tAstroGlis3 Motif Peaks\n";   
print OUT "   longLabel\tAstroGlis3 Peaks, HOMER default, with motif\n";
print OUT "   color\t$useColor\n";
print OUT "   bigDataUrl\tDATA/Astro_Glis3.homer-peakcalls.default_withMotif.bigBed\n";
print OUT "   visibility\tdense\n\n";

print OUT "   track\tAstroPkFDRe-5All\n";
print OUT "   parent\tKJeon_ASI.ChIP\n";
print OUT "   type\tbigBed 4\n";
print OUT "   shortLabel\tAstroGlis3 Peaks, FDR e-5\n";   
print OUT "   longLabel\tAstroGlis3 Peaks, HOMER FDR e-5, all\n";
print OUT "   color\t$useColor\n";
print OUT "   bigDataUrl\tDATA/Astro_Glis3.homer-peakcalls.fdr_e-5.bigBed\n";
print OUT "   visibility\tdense\n\n";

print OUT "   track\tAstroPkFDRe-5Motif\n";
print OUT "   parent\tKJeon_ASI.ChIP\n";
print OUT "   type\tbigBed 4\n";
print OUT "   shortLabel\tAstroGlis3 Motif Peaks, FDR e-5\n";   
print OUT "   longLabel\tAstroGlis3 Peaks, HOMER FDR e-5, with motif\n";
print OUT "   color\t$useColor\n";
print OUT "   bigDataUrl\tDATA/Astro_Glis3.homer-peakcalls.fdr_e-5_withMotif.bigBed\n";
print OUT "   visibility\tdense\n\n";

close(OUT);