for k in `ls *.vcf`; do echo $k; bgzip $k; done; for k in `ls *.gz`; do echo $k; tabix $k; done; for k in `ls *gz `; do echo $k | sed 's/withReSeq_no_//' | sed 's/_BQSR_mutect_against_MaleNormal\.vcf\.gz//'; done > sampleName.txt ## making a hub ## need three files: genomes.txt hub.txt trackDb.txt