1. Copied bigWig files from with copyFile.sh
	
	for k in `cat  /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/BROMODICHLOROACETIC-ACID-_BDCA/BROMODICHLOROACETIC-ACID-_BDCA_samples.txt `;  do echo $k;  ls /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/mergedData/$k/customTrack/$k".bw"  ; done;
	to: /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxBDCA/mm10/DATA/

2. Copied tbidx VCF files from with copyFile.sh

	for k in `cat /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/BROMODICHLOROACETIC-ACID-_BDCA/BROMODICHLOROACETIC-ACID-_BDCA_samples.txt `;  do cp  /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/mergedData/$k/varCallDir/$k"_mutect2_PON_w_BQSR_filtered.vcf"  /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxBDCA/mm10/DATA/   ; done;
	
	for k in `cat   /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/BROMODICHLOROACETIC-ACID-_BDCA/BROMODICHLOROACETIC-ACID-_BDCA_samples.txt `;  do bgzip /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxBDCA/mm10/DATA/$k"_mutect2_PON_w_BQSR_filtered.vcf"  ; done;

	for k in `cat   /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/BROMODICHLOROACETIC-ACID-_BDCA/BROMODICHLOROACETIC-ACID-_BDCA_samples.txt`;  do tabix /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxBDCA/mm10/DATA/$k"_mutect2_PON_w_BQSR_filtered.vcf.gz"  ; done;

	to: /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxBDCA/mm10/DATA/


3. Construct the trackDb.txt files