##	Copy .bw files
#for k in `cat  /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/GINKGO/GINKGO-BILOBA-EXTRACT_samples.txt `;  do echo $k;  cp /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/mergedData/$k/customTrack/$k".bw" /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxGinkgo/mm10/DATA/  ; done; 


##	Copy .vcf files
#for k in `cat  /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/GINKGO/GINKGO-BILOBA-EXTRACT_samples.txt `;  do  cp /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/mergedData/$k/varCallDir/$k"_mutect_against_MaleNormal.vcf" /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxGinkgo/mm10/DATA/  ; done;  


##	Create .gz and .tbi files 
#for k in `cat  /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/GINKGO/GINKGO-BILOBA-EXTRACT_samples.txt `;  do bgzip /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxGinkgo/mm10/DATA/$k"_mutect_against_MaleNormal.vcf"  ; done;  
#for k in `cat  /ddn/gs1/home/li11/project2018/NTP_exome_project/ReAnalyzeEffort/analysis_by_chemical/gtx/GINKGO/GINKGO-BILOBA-EXTRACT_samples.txt `;  do tabix /data/wade/jianying/ArunExomeSeq/trackHubs/exomeHCCHubs/gtxGinkgo/mm10/DATA/$k"_mutect_against_MaleNormal.vcf.gz"  ; done;