wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.Crm1-Krystal-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.Crm1-Krystal-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.Crm1-Krystal-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.Crm1-Krystal-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.H3K4me3-Epi-Mll2Exp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.H3K4me3-Epi-Mll2Exp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.H3K4me3-HAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.H3K4me3-HAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.H3K4me3-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.H3K4me3-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.H3K4me3-NFYAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.H3K4me3-NFYAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.HA-Bethyl-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.HA-Bethyl-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.HA-Crm1-Bethyl-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.HA-Crm1-Bethyl-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.HA-Crm1-Bethyl-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.HA-Crm1-Bethyl-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.HA-Crm1-CST_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.HA-Crm1-CST_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.HA-CST-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.HA-CST-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.IgG-Epi-Mll2Exp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.IgG-Epi-Mll2Exp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.IgG-HAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.IgG-HAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.IgG-IH-Mll2Exp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.IgG-IH-Mll2Exp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.IgG-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.IgG-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.IgG-NFYAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.IgG-NFYAExp_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.Mll2-Epi-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.Mll2-Epi-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.Mll2-Epi-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.Mll2-Epi-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.Mll2-IH-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.Mll2-IH-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.Mll2-IH-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.Mll2-IH-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.Mll2-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.Mll2-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.NFYA-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.NFYA-Krystal_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.NFYA-LongD1-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.NFYA-LongD1-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.NFYA-LongD1-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.NFYA-LongD1-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.NFYA-Short1B-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.NFYA-Short1B-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.NFYA-Short1B-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.NFYA-Short1B-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.NFYA-WT-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.NFYA-WT-1_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &
wigToBigWig /ddn/gs1/home/jothi/Analysis/mm9/Siladi/2025-02-20-Cut-and-Run-NFYA-Mll2-CRM1-HA-K4/NS20136.NFYA-WT-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph /ddn/gs1/group/jothi/jothidata/UCSC/Data/mm9/chrom.sizes NS20136.NFYA-WT-2_20250218_111830.L001.paired-bowtie2.mapq30.bam.bedpe.uniq.bedGraph.bw &